| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,802,184 – 6,802,234 |
| Length | 50 |
| Max. P | 0.755316 |
| Location | 6,802,184 – 6,802,234 |
|---|---|
| Length | 50 |
| Sequences | 8 |
| Columns | 66 |
| Reading direction | reverse |
| Mean pairwise identity | 74.79 |
| Shannon entropy | 0.44571 |
| G+C content | 0.40084 |
| Mean single sequence MFE | -11.15 |
| Consensus MFE | -6.15 |
| Energy contribution | -6.83 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.755316 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6802184 50 - 21146708 CUCAAUCAGCGUGUAAGCAAUUGCCAAUACGUGAUUUGGC-AAAAAACAAA--------------- ........((......))..(((((((........)))))-))........--------------- ( -10.90, z-score = -1.72, R) >droSim1.chr2R 5378090 50 - 19596830 CUCAAUCAGCGUGUAAGCAAUUGCCAAUACGUGAUUUGCC-AAAAAACAAA--------------- ...(((((.(((((..((....))..))))))))))....-..........--------------- ( -9.50, z-score = -1.69, R) >droSec1.super_1 4391479 50 - 14215200 CUCAAUCAGCGUGUAAGCAAUUGCCAAUACGUGAUUUGGC-AAAAAACAAA--------------- ........((......))..(((((((........)))))-))........--------------- ( -10.90, z-score = -1.72, R) >droYak2.chr2R 18813464 51 + 21139217 CUCAAUCAGCGUGUAGGCAAUUGCCAAUACGUGAUUUGCCAAAAAAACAAA--------------- ...(((((.(((((.(((....))).))))))))))...............--------------- ( -13.60, z-score = -2.96, R) >droEre2.scaffold_4845 3616876 50 + 22589142 CUCAAUCAGCGUGUAAGCAAUUGCCAAUACGUGAUUUGCC-AGAAAACAAA--------------- ...(((((.(((((..((....))..))))))))))....-..........--------------- ( -9.50, z-score = -1.32, R) >droAna3.scaffold_13266 529214 50 - 19884421 CUCAAUCAGCGUGUAAGCAAUUGCCAAUACGUGAUUUGCC-AAAACAGAAA--------------- ...(((((.(((((..((....))..))))))))))....-..........--------------- ( -9.50, z-score = -1.32, R) >dp4.chr3 853742 50 + 19779522 CUCAAUCAGCGUGUAAGCAAUUGCCAAUACGUGAUUUGGCAAAACCAAAA---------------- .....(((.(((((..((....))..))))))))(((((.....))))).---------------- ( -11.30, z-score = -1.84, R) >droVir3.scaffold_12823 2122030 59 + 2474545 -------CGCAAUUAAAUGCUUGCUAGCACACUUUUAGGCGUGUAAACACGCGCACAAACGCCGAA -------.((.......((((....)))).........(((((....)))))))............ ( -14.00, z-score = -0.35, R) >consensus CUCAAUCAGCGUGUAAGCAAUUGCCAAUACGUGAUUUGCC_AAAAAACAAA_______________ ..(((...((((((..((....))..))))))...)))............................ ( -6.15 = -6.83 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:43 2011