| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,747,908 – 6,748,013 |
| Length | 105 |
| Max. P | 0.565396 |
| Location | 6,747,908 – 6,748,013 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 66.51 |
| Shannon entropy | 0.53537 |
| G+C content | 0.40087 |
| Mean single sequence MFE | -25.00 |
| Consensus MFE | -12.73 |
| Energy contribution | -13.48 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.565396 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6747908 105 - 21146708 ---UUUCUUAUCACAACACGCCCACUUGACAUUACUUGCUCAACAUUGUGCUAUUGCCAAGUCGCGUAAAAU-AUGGCUCAUUACAUUUGUGUUGGCCAAAAGUGGCAG ---.......((((...((((..(((((.((......((.((....)).))...)).))))).)))).....-.((((.((.(((....))).))))))...))))... ( -23.60, z-score = -0.67, R) >droSim1.chr2R 5342161 105 - 19596830 ---UUUCUUAUCACAACACACCCACUUGGCAUUACUUGCUCAACAUGGUGCAAUUGCCAAGUCGCGUAAAAU-AUGGCUCAUUACAUUUGUGUUGGCCAAAAGUGGCCG ---...........((((((((.((((((((....((((.(......).)))).)))))))).).)).....-(((........)))..)))))(((((....))))). ( -29.20, z-score = -1.88, R) >droSec1.super_1 4334208 105 - 14215200 ---UUUCUUAUCACAACACACCCACUUGGCAUUACUUGCUCAACAUUGUGCAAUUGCCAAGACGCGUAAAAU-AUGGCUCAUUACAUUUGUGUUGGCCAAAAGUGGCCG ---...........((((((....(((((((....((((.((....)).)))).)))))))....((((...-........))))...))))))(((((....))))). ( -29.20, z-score = -2.35, R) >droVir3.scaffold_12875 11025161 107 - 20611582 CAGAAAUAUGCCUUAGAAUA-UUGUGGGAGAGUAUUUUCUUUAUAUUGUGCAAAC-UUAUGCAAUAUAUAAUCGUUCCUUUAUGCGCUGAAGAUUUCUUUGAGCAAUUG ...................(-((((.((((((.((((((.((((((..((((...-...))))..)))))).(((........)))..))))))))))))..))))).. ( -18.00, z-score = 0.46, R) >consensus ___UUUCUUAUCACAACACACCCACUUGACAUUACUUGCUCAACAUUGUGCAAUUGCCAAGUCGCGUAAAAU_AUGGCUCAUUACAUUUGUGUUGGCCAAAAGUGGCCG .............((((((....((((((((....((((.(......).)))).))))))))...........(((........)))..))))))(((......))).. (-12.73 = -13.48 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:39 2011