| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,738,334 – 6,738,436 |
| Length | 102 |
| Max. P | 0.726724 |
| Location | 6,738,334 – 6,738,436 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 80.46 |
| Shannon entropy | 0.25990 |
| G+C content | 0.28346 |
| Mean single sequence MFE | -22.07 |
| Consensus MFE | -15.77 |
| Energy contribution | -16.63 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.726724 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6738334 102 - 21146708 AAACAUAAAUG----AAGUAGUCGUACCCAUGACUACACAUGUGUUUGGCCAUAAACAAAUUCAAAUACAUAUACGUUUUGUAUAUAUGGUAUAUAUAUAUAUAUG ......(((((----..((((((((....))))))))..((((((((((............))))))))))...)))))((((((((((.....)))))))))).. ( -24.40, z-score = -2.20, R) >droYak2.chr2R 18746793 83 + 21139217 ---CAUAAAUG----AAGUAGUCGUACCCAUGACUACACAUGUGUUUGGCCAUAAACAAAUUU--GUACAUAUACA----AUAUAUACUGUGUAUA---------- ---........----..((((((((....))))))))(((..((((((....))))))....)--))..(((((((----........))))))).---------- ( -18.70, z-score = -1.14, R) >droSec1.super_1 4324724 99 - 14215200 ---CAUAAAUGAAGUAAGUAGUCGUACCCAUGACUACACAUGUGUUUGGCCAUAAACAAAUUCAAAUACAUAUACAUUUUGUAUAUAUUGUAUAUAUAUAUA---- ---...(((((......((((((((....))))))))..((((((((((............))))))))))...)))))(((((((((.....)))))))))---- ( -23.10, z-score = -2.36, R) >consensus ___CAUAAAUG____AAGUAGUCGUACCCAUGACUACACAUGUGUUUGGCCAUAAACAAAUUCAAAUACAUAUACAUUUUGUAUAUAUUGUAUAUAUAUAUA____ .................((((((((....))))))))..((((((((((............))))))))))........(((((((((...)))))))))...... (-15.77 = -16.63 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:37 2011