| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,732,403 – 6,732,454 |
| Length | 51 |
| Max. P | 0.874398 |
| Location | 6,732,403 – 6,732,454 |
|---|---|
| Length | 51 |
| Sequences | 8 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 89.62 |
| Shannon entropy | 0.20650 |
| G+C content | 0.52823 |
| Mean single sequence MFE | -16.28 |
| Consensus MFE | -11.30 |
| Energy contribution | -11.42 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.513331 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6732403 51 + 21146708 UCGUCACGUUCAGUGAUUUAUUGGCCCACUUGGC-GAGUGGGCCAACUCACG ..(((((.....)))))...(((((((((((...-)))))))))))...... ( -22.70, z-score = -4.21, R) >droSim1.chr2R 5326350 51 + 19596830 UCGUCACGUUCACUGAUUUAUUGGCCCACUUGGC-GAGUGGGCCAACUCACG ..((((.(....)))))...(((((((((((...-)))))))))))...... ( -18.50, z-score = -2.99, R) >droSec1.super_1 4318952 51 + 14215200 UCGUCACGUUCACUGAUUUAUUGGCCCACUUGGC-GAGUGGGCCAACUCACG ..((((.(....)))))...(((((((((((...-)))))))))))...... ( -18.50, z-score = -2.99, R) >droYak2.chr2R 18740511 51 - 21139217 UCGUCACGUUCACUGAUUUAUUGGCCCACUUGGC-GAGUGGGCCAACUCGCG ..((((.(....)))))...(((((((((((...-)))))))))))...... ( -18.50, z-score = -2.52, R) >droEre2.scaffold_4845 3545819 51 - 22589142 UCGUCACGUUCACUGAUUUAUUGGCCCAGUUGGC-GAGUGGGCCAACUCGCA ..((((.(....)))))...((((((((.((...-)).))))))))...... ( -14.60, z-score = -0.69, R) >droVir3.scaffold_12875 11013049 51 + 20611582 UCGUCACAUUCGCUGAUUUAUUGGCACACUUGGU-GAGUGGGCCAACUCGUG ..(((.(((((((..(.............)..))-))))))))......... ( -12.02, z-score = -0.32, R) >droMoj3.scaffold_6496 10937032 52 - 26866924 UCGUCACAUUUCAUGAUUUAUUGGCACACUUUGCCGAGUGGGCCAACUCGUG ...........(((((....(((((.(((((....))))).))))).))))) ( -14.20, z-score = -1.91, R) >droGri2.scaffold_15245 4094103 51 + 18325388 UCGUCACAUUCGUUGAUUUAUUGGCACACUUGGU-GAGUGGGCCAACUUGUG ..((((.......))))...(((((.(((((...-))))).)))))...... ( -11.20, z-score = -0.13, R) >consensus UCGUCACGUUCACUGAUUUAUUGGCCCACUUGGC_GAGUGGGCCAACUCGCG ..((((.......))))...(((((.(((((....))))).)))))...... (-11.30 = -11.42 + 0.12)
| Location | 6,732,403 – 6,732,454 |
|---|---|
| Length | 51 |
| Sequences | 8 |
| Columns | 52 |
| Reading direction | reverse |
| Mean pairwise identity | 89.62 |
| Shannon entropy | 0.20650 |
| G+C content | 0.52823 |
| Mean single sequence MFE | -17.65 |
| Consensus MFE | -11.70 |
| Energy contribution | -11.82 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.60 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.874398 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6732403 51 - 21146708 CGUGAGUUGGCCCACUC-GCCAAGUGGGCCAAUAAAUCACUGAACGUGACGA .(((((((((((((((.-....)))))))))))...))))............ ( -22.70, z-score = -4.16, R) >droSim1.chr2R 5326350 51 - 19596830 CGUGAGUUGGCCCACUC-GCCAAGUGGGCCAAUAAAUCAGUGAACGUGACGA (((.((((((((((((.-....)))))))))))......(....).).))). ( -20.90, z-score = -3.42, R) >droSec1.super_1 4318952 51 - 14215200 CGUGAGUUGGCCCACUC-GCCAAGUGGGCCAAUAAAUCAGUGAACGUGACGA (((.((((((((((((.-....)))))))))))......(....).).))). ( -20.90, z-score = -3.42, R) >droYak2.chr2R 18740511 51 + 21139217 CGCGAGUUGGCCCACUC-GCCAAGUGGGCCAAUAAAUCAGUGAACGUGACGA (((..(((((((((((.-....)))))))))))......(....)))).... ( -21.30, z-score = -3.38, R) >droEre2.scaffold_4845 3545819 51 + 22589142 UGCGAGUUGGCCCACUC-GCCAACUGGGCCAAUAAAUCAGUGAACGUGACGA ..((.(((((((((...-......)))))))))...((((....).))))). ( -15.70, z-score = -1.48, R) >droVir3.scaffold_12875 11013049 51 - 20611582 CACGAGUUGGCCCACUC-ACCAAGUGUGCCAAUAAAUCAGCGAAUGUGACGA ((((.((((((.((((.-....)))).))))))...((...)).)))).... ( -12.20, z-score = -1.13, R) >droMoj3.scaffold_6496 10937032 52 + 26866924 CACGAGUUGGCCCACUCGGCAAAGUGUGCCAAUAAAUCAUGAAAUGUGACGA ..((.((((((.((((......)))).))))))...((((.....)))))). ( -14.60, z-score = -1.84, R) >droGri2.scaffold_15245 4094103 51 - 18325388 CACAAGUUGGCCCACUC-ACCAAGUGUGCCAAUAAAUCAACGAAUGUGACGA ((((.((((((.((((.-....)))).))))))...((...)).)))).... ( -12.90, z-score = -1.95, R) >consensus CGCGAGUUGGCCCACUC_GCCAAGUGGGCCAAUAAAUCAGUGAACGUGACGA .....((((((.((((......)))).))))))................... (-11.70 = -11.82 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:36 2011