| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,727,903 – 6,727,995 |
| Length | 92 |
| Max. P | 0.794046 |
| Location | 6,727,903 – 6,727,995 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 89.80 |
| Shannon entropy | 0.18087 |
| G+C content | 0.60953 |
| Mean single sequence MFE | -38.02 |
| Consensus MFE | -25.82 |
| Energy contribution | -27.78 |
| Covariance contribution | 1.96 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.794046 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6727903 92 + 21146708 UCCACGCUCUGACCUCCGCCUCCACUGGGCGACAGCUUCUUACUGUUGCUGCUCACUGGAGCGGCUGGUUGUACCUGUGGCAAUGUCACAAC ..........((((.((((.((((.((((((.((((........)))).)))))).))))))))..)))).....((((((...)))))).. ( -35.30, z-score = -2.76, R) >droEre2.scaffold_4845 3541314 89 - 22589142 UCCACGCUCUGUCCACCGCCUCCACUGGGCGAAAGCUUCUUGCUGUUGCU---CACGGGAGCGGGUGGUUGUACCUGUGGCAGGGUCACAAC .....((((((.(((((((.(((..(((((((.(((.....))).)))))---))..))))))((((....)))).))))))))))...... ( -37.70, z-score = -1.68, R) >droYak2.chr2R 18735923 89 - 21139217 UCCACGCUCUGUCCUCCGCCUCCACUGGGCGAGAGCUUCUUGCUGUUGCU---CACUGGAGCGGGGGGUUGUACCUGUGGCAUGGUCACAAC ............(((((((.((((.(((((((.(((.....))).)))))---)).)))))))))))((((((((........))).))))) ( -42.70, z-score = -3.20, R) >droSec1.super_1 4314491 89 + 14215200 UCCACGCUCUGACCUCCGCUGCCACUGGGCGACAGCUUCUUGCUGUUGGU---CACUGGAGCGGCUGGUUGUACCUGUGGCACAGCCACAAC ..........((((.(((((.(((.(((.(((((((.....))))))).)---)).))))))))..)))).....((((((...)))))).. ( -40.50, z-score = -2.84, R) >droSim1.chr2R 5321809 89 + 19596830 UCCACGCUCUGACCUCCCCCUCCACUAGGCGACAGCUUCUUGCUGUUGGU---CACUGGAGCGGCUGGUUGUACCUGUGGCACAGCCACAAC ..........((((..((.(((((.(.(.(((((((.....))))))).)---.).))))).))..)))).....((((((...)))))).. ( -33.90, z-score = -1.85, R) >consensus UCCACGCUCUGACCUCCGCCUCCACUGGGCGACAGCUUCUUGCUGUUGCU___CACUGGAGCGGCUGGUUGUACCUGUGGCACAGUCACAAC ..........((((.((((.((((.(((((((((((.....)))))))))...)).))))))))..)))).....((((((...)))))).. (-25.82 = -27.78 + 1.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:35 2011