| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,722,065 – 6,722,116 |
| Length | 51 |
| Max. P | 0.815925 |
| Location | 6,722,065 – 6,722,116 |
|---|---|
| Length | 51 |
| Sequences | 4 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 89.54 |
| Shannon entropy | 0.16647 |
| G+C content | 0.58824 |
| Mean single sequence MFE | -15.80 |
| Consensus MFE | -14.98 |
| Energy contribution | -14.60 |
| Covariance contribution | -0.38 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.815925 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6722065 51 + 21146708 AUAGACUCCACUGUACACAUGGAUGCGGAAGGGUCGCAAGGAGCUGGAGCG ...(.(((((..((.(.(.(((((.(....).))).)).)).)))))))). ( -13.90, z-score = -0.83, R) >droSim1.chr2R 5314055 51 + 19596830 AUAGCCUCCACUAUACACAUAGACGCGGAAGGGUCGCAAGAAGCUGGAGCG ...((.((((...........(((.(....).)))((.....)))))))). ( -15.50, z-score = -2.03, R) >droSec1.super_1 4308697 51 + 14215200 AGAGCCUCCACUGUACACAUAGACGCGGAAGGGUCGCAAGGAGCUGGAGCG ...((.((((...........(((.(....).)))((.....)))))))). ( -15.50, z-score = -0.84, R) >droEre2.scaffold_4845 3535414 51 - 22589142 AGAGCUUCCACUGUACGUAUGGACGCGGAAGGGUCGCGAGGAGCUGGAGCG ...(((.(((((.(.(((...(((.(....).)))))).).)).)))))). ( -18.30, z-score = -1.35, R) >consensus AGAGCCUCCACUGUACACAUAGACGCGGAAGGGUCGCAAGGAGCUGGAGCG ...(.(((((...........(((.(....).)))((.....)))))))). (-14.98 = -14.60 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:34 2011