| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,697,151 – 6,697,229 |
| Length | 78 |
| Max. P | 0.905053 |
| Location | 6,697,151 – 6,697,229 |
|---|---|
| Length | 78 |
| Sequences | 7 |
| Columns | 79 |
| Reading direction | forward |
| Mean pairwise identity | 71.85 |
| Shannon entropy | 0.56410 |
| G+C content | 0.47640 |
| Mean single sequence MFE | -24.12 |
| Consensus MFE | -7.23 |
| Energy contribution | -8.11 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.46 |
| Mean z-score | -2.60 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.905053 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6697151 78 + 21146708 UGCCAGCCCUGAUGGCUGCUUUGUUGAACUAGUUCCAGUUCCGGAGCUAGUGAACCAAUAGCAAA-CGGAACAAAACAA ((((((((.....)))))...(((((.(((((((((......)))))))))....))))))))..-............. ( -24.60, z-score = -2.62, R) >droAna3.scaffold_13266 18190682 76 + 19884421 UGCCAUCCCUGAAGGC-GGUGUUUUAAAUCAGUUCCGGUUC-GAAACCUGCGAAUGAAUGGCAAG-UGGAACAAAAUAU ((((((........((-((.((((..((((......)))).-.))))))))......))))))..-............. ( -18.54, z-score = -0.74, R) >droEre2.scaffold_4845 3510849 77 - 22589142 UGCCAGCCCUGGAGGC-GCUUUGUAAAACUAGCUCCAGUUCCGGAGCUAGGGAACCAAUGGCAAG-CGGAACAAAAUAA ((((((((.....)))-...(((.....((((((((......)))))))).....))))))))..-............. ( -25.90, z-score = -1.37, R) >droYak2.chr2R 18705524 72 - 21139217 UGCCAGCCCUGAAGGC-GGUUGGUAAAACUAGCUCCAGUUCCGGAGUUAGUGAACCAAUGGUAAU-UGGAACAA----- (((((((((.....).-))))))))..(((((((((......)))))))))...(((((....))-))).....----- ( -29.20, z-score = -3.91, R) >droSec1.super_1 4284432 78 + 14215200 UGCCAGCCCUGAAUUCCGCUUUGUUGUACUAGCUCCAGUUCCGGAGCUAGUGAACCAAUAGCCAG-CGGAACAAAAUAA .............(((((((((((((((((((((((......))))))))))...))))))..))-)))))........ ( -29.30, z-score = -5.02, R) >droSim1.chr2R 5288686 78 + 19596830 UGCCAGCCCUGAAUUCGGCUUUGUUGUACUAGUUCCAGUUCCGGAGCUAGUGAACCAAUAGCCAG-CGGAACAAAAUAA ..((.((...(....)(((((((...((((((((((......))))))))))...))).)))).)-))).......... ( -24.10, z-score = -2.68, R) >droMoj3.scaffold_6496 10375290 74 + 26866924 UGUCAGCCCUGGUAAUGGGGCUCCAAA-----UACCAGUUCGUCCGCGAACGAACUACAAAUAAAACGAAACAAAACAA ..((((((((......)))))).....-----....(((((((......)))))))...........)).......... ( -17.20, z-score = -1.87, R) >consensus UGCCAGCCCUGAAGGC_GCUUUGUUAAACUAGUUCCAGUUCCGGAGCUAGUGAACCAAUAGCAAG_CGGAACAAAAUAA ..(((((..........)))........((((((((......)))))))).................)).......... ( -7.23 = -8.11 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:33 2011