| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,696,038 – 6,696,134 |
| Length | 96 |
| Max. P | 0.969997 |
| Location | 6,696,038 – 6,696,134 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 76.59 |
| Shannon entropy | 0.41189 |
| G+C content | 0.36199 |
| Mean single sequence MFE | -15.62 |
| Consensus MFE | -10.56 |
| Energy contribution | -10.72 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.82 |
| SVM RNA-class probability | 0.969997 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6696038 96 + 21146708 CUGAAAACACAAAUGUCUUUAAAGAGACUCGUACCAUAUCU---GGCGUAUGGUACCCGUACCCAGUCCAAA-UAAAAAAAAA-----CUUCAAAACCCAGUAAA- .((((.........(((((....)))))...........((---((.((((((...))))))))))......-..........-----.))))............- ( -17.40, z-score = -2.54, R) >droSim1.chr2R 5287184 101 + 19596830 CUGAAAACACAAAUGUCUUUAAAGAGAUUCGUACCAUAUCU---GGCGUAUGGUGCCCAUACCCAGCCCAAA-UAAAAAAAAAAAAACUUUCAAAAACCCGUAAA- .(((((..((.(((.(((....))).))).)).......((---((.((((((...))))))))))......-...............)))))............- ( -17.50, z-score = -2.81, R) >droSec1.super_1 4283311 99 + 14215200 CUGAAAACACAAAUGUCUUUAAAGAGAUUCGUACCAUAUCU---GGCGUAUGGUGCCCAUACCCAGCCCAAA-UAAAAAAAAAAA--CUUUCAAAAACCCGUAAA- .(((((..((.(((.(((....))).))).)).......((---((.((((((...))))))))))......-............--.)))))............- ( -17.50, z-score = -2.76, R) >droEre2.scaffold_4845 3509723 99 - 22589142 CUGAAAACACAAAUGUCUUCAAAGAGACUCGAACCAUAUCU---GACGUAUGGUACCCGUACCCAGCCUUAA-UUAAAAAAAAAAA--UUUCAAAAACCCUAAAA- .(((((........(((((....)))))....(((((((..---...)))))))..................-.............--)))))............- ( -12.90, z-score = -2.14, R) >droAna3.scaffold_13266 18189701 105 + 19884421 CUAAAAACAAAAAUGUCUU-AAAAAGACUCUCGGCAUAUCUUUUGACGUAUGGAGCCUUUCCAGAACCGAAAACUAUUGAAAAACUCCCAACAGUAAGUUCCCGAU ..............((((.-....))))..((((......(((((.....(((((...)))))....)))))(((.(((.........))).)))......)))). ( -12.80, z-score = 0.20, R) >consensus CUGAAAACACAAAUGUCUUUAAAGAGACUCGUACCAUAUCU___GGCGUAUGGUGCCCAUACCCAGCCCAAA_UAAAAAAAAAAA__CUUUCAAAAACCCGUAAA_ ..............(((((....)))))..(((((((((........))))))))).................................................. (-10.56 = -10.72 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:32 2011