| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,677,316 – 6,677,423 |
| Length | 107 |
| Max. P | 0.655485 |
| Location | 6,677,316 – 6,677,423 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 71.33 |
| Shannon entropy | 0.52644 |
| G+C content | 0.50117 |
| Mean single sequence MFE | -34.19 |
| Consensus MFE | -17.79 |
| Energy contribution | -17.69 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.655485 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6677316 107 - 21146708 GGGAAGGGGAAAAGCCACAGGUGA----GCAGGGACUAAUAGGAAACUGACGCCA--UCAUCUCA-----UGUGCUCCUGUUCGCAAUUUUGAUUGGCCACUGCACAACAAUGUGGCU-- ............(((((((.((((----((((((.....(((....)))..((((--(......)-----)).))))))))))))....(((.(((((....)).)))))))))))))-- ( -35.50, z-score = -1.53, R) >droSim1.chr2R 5261522 106 - 19596830 GGGAUGGGUAAAAGCCACAGGUGA----GCAGGGACUAGGAGGAAACUGACGCCA--UCAUCUCA-----UGUGUUCCUGGUCGC-AUUUUGAUUGGCCAUUGCACAACAAUGUGGCU-- ............(((((((.((((----.(((((((...((((....(((.....--))))))).-----...))))))).))))-...(((.(((((....)).)))))))))))))-- ( -34.80, z-score = -0.92, R) >droSec1.super_1 4256920 100 - 14215200 ------GGGAUAUGCCACAGGUGA----GCAGGGACUAGGAGGAAACUGACGCCA--UCAUCUCA-----UGUGUUCCUGGUCGC-AUUUUGAUUGGCCAUUGCACAACAAUGUGGCU-- ------.......((((((.((((----.(((((((...((((....(((.....--))))))).-----...))))))).))))-...(((.(((((....)).)))))))))))).-- ( -34.10, z-score = -1.20, R) >droYak2.chr2R 18661294 105 + 21139217 GAGAAAGGUGAAAGCCACAGGUGA----ACAAGGACUAAAAGGAAACUGACGCCA--UCAUCUCC-----UGUGUUCCUGGUCGC-AUUUUGA-UGGCCAUUGCACAACAAUGUGGCU-- ............((((((((((((----....((......((....))....)).--)))))...-----(((((...(((((((-.....).-))))))..)))))....)))))))-- ( -31.00, z-score = -1.13, R) >droEre2.scaffold_4845 3488445 105 + 22589142 CAGAAAGG-AAAAGCCACAGGUGA----ACAGGGACUUGGAGCAAACUGACGCUA--UCAUCUCA-----UGUGUUCCUGGUCGC-CUUUUGAUUGGCCAUUGCACAACAAUGUGGCU-- ........-...((((((((((((----.(((((((...(((.....(((.....--))).))).-----...))))))).))))-)..(((.(((((....)).)))))))))))))-- ( -34.10, z-score = -1.63, R) >droVir3.scaffold_12875 16707978 119 - 20611582 GGGAAUGGAAAGGAUUAUGAUUGGCAUUGUGUCGACAGACGGGGGAACGGGGCCAGGUUUUGUCAGAGGGGGCAGCUCCGCUUUCGUUUGUGUUUGG-AAUCAUGCAACGAUUUGUUGCG ................(((((((((.....))).(((((((..((..((((((.......((((......))))))))))))..)))))))......-))))))(((((.....))))). ( -35.61, z-score = -0.87, R) >consensus GGGAAAGGGAAAAGCCACAGGUGA____GCAGGGACUAAGAGGAAACUGACGCCA__UCAUCUCA_____UGUGUUCCUGGUCGC_AUUUUGAUUGGCCAUUGCACAACAAUGUGGCU__ .............(((((((((((.....(((...(.....)....)))........)))))........(((((...((((((..........))))))..)))))....))))))... (-17.79 = -17.69 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:29 2011