| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,664,637 – 6,664,735 |
| Length | 98 |
| Max. P | 0.638756 |
| Location | 6,664,637 – 6,664,735 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 83.93 |
| Shannon entropy | 0.28684 |
| G+C content | 0.51388 |
| Mean single sequence MFE | -23.48 |
| Consensus MFE | -19.40 |
| Energy contribution | -19.64 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.638756 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6664637 98 + 21146708 GUUAACCGAUCGCGGGGUCAAAGGGGGACAUCAAACAACAGGCGGUGCAAUUAUACAAUUAGCACGCUGUUAGUGCGAAAGAGAGGCAACAGCUAGCU- (((..((((((....))))...))..)))...........(((.((((((((....)))).))))((((((.((.(....)....))))))))..)))- ( -25.10, z-score = -1.24, R) >droEre2.scaffold_4845 3476172 98 - 22589142 GUUAAC-GAUCGCGGGGUCAAAGGGGGGCCUCAAACAACAGGCGGUGCAAUUAUACAAUUGGCGCACAGUGGGUGCGAGAGAGAGAGAGGAAAGGAAUA .....(-..((((((((((.......)))))).....((..((.((((((((....)))).))))...))..))))))..).................. ( -23.00, z-score = -1.33, R) >droYak2.chr2R 18647476 91 - 21139217 GUUAAC-GAUCGCGGGGUCAAAGGGGGACUUCAGAGAACAGGCGGUGCAGUUAUACAAUUAGCGCACAGUGGGAGCGAAAGAGAGGCCA--GCA----- ......-....((((((((.......))))))........(((.((((.((((......))))))))........(....)....))).--)).----- ( -23.60, z-score = -1.58, R) >droSec1.super_1 4244227 94 + 14215200 GUUAAC-GAUCGCGGGGUCAAAGGGGGACUUCAAACAACGGGCGGUGCAAUUAUACAAUUAGCACACUGUUAGUGCGAAAGAGAUGCA---GCCAACU- ......-..((((((((((.......))))))..(((((((...((((((((....)))).)))).))))).))))))..........---.......- ( -22.80, z-score = -0.90, R) >droSim1.chr2R_random 1840516 94 + 2996586 GUUAAC-GAUCGCGGGGUCAAAGGGGGACUUCAAACAACGGGCGGUGCAAUUAUACAAUUAGCACACUGUUAGUGCGAAAGAGAGGCA---GCCAACU- (((..(-..((((((((((.......))))))..(((((((...((((((((....)))).)))).))))).))))))..)...))).---.......- ( -22.90, z-score = -1.01, R) >consensus GUUAAC_GAUCGCGGGGUCAAAGGGGGACUUCAAACAACAGGCGGUGCAAUUAUACAAUUAGCACACUGUUAGUGCGAAAGAGAGGCA___GCCAACU_ .........((((((((((.......))))))....(((((...((((((((....)))).)))).)))))...))))..................... (-19.40 = -19.64 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:26 2011