| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,480,912 – 2,481,010 |
| Length | 98 |
| Max. P | 0.569397 |
| Location | 2,480,912 – 2,481,010 |
|---|---|
| Length | 98 |
| Sequences | 10 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 84.76 |
| Shannon entropy | 0.28589 |
| G+C content | 0.37022 |
| Mean single sequence MFE | -23.59 |
| Consensus MFE | -18.85 |
| Energy contribution | -18.59 |
| Covariance contribution | -0.26 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.569397 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2480912 98 - 23011544 UGCAUUUG-GGCCAACUUUUUGACCUCCUUGGUUAUUAUUUAUGAAGCUAUUAGCAAAGUGUGUGAACAUAUUUGCCUUUAUAAAGACAGCGCACACAU------------------ ......((-.((........(((((.....)))))...(((((((((......(((((.((((....))))))))))))))))))....)).)).....------------------ ( -20.90, z-score = -0.64, R) >droSim1.chr2L 2443161 98 - 22036055 UGCAUUUG-GGCCAACUUUUUGACCUCCUUGGUUAUUAUUUAUGAAGCUAUUAGCAAAGUGUGUGAACAUAUUUGCCUUUAUAAAGCCAGCGCACACAU------------------ (((.....-(((........(((((.....)))))...(((((((((......(((((.((((....)))))))))))))))))))))...))).....------------------ ( -23.50, z-score = -1.19, R) >droSec1.super_5 654544 98 - 5866729 UGCAUUUG-GGCCAACUUUUUGACCUCCUUGGUUAUUAUUUAUGAAGCUAUUAGCAAAGUGUGUGAACAUAUUUGCCUUUAUAAAGCCAGCACACACAU------------------ (((.....-(((........(((((.....)))))...(((((((((......(((((.((((....))))))))))))))))))))).))).......------------------ ( -22.80, z-score = -1.21, R) >droYak2.chr2L 2472434 98 - 22324452 UGCAUUUG-GGCCAACUUUUUGACCUCCUUGGUUAUUAUUUAUGAAGCUAUUAGCAAAGUGUGUGAACAUAUUUGCCUUUAUAAAGCCAGCGCACACAU------------------ (((.....-(((........(((((.....)))))...(((((((((......(((((.((((....)))))))))))))))))))))...))).....------------------ ( -23.50, z-score = -1.19, R) >droEre2.scaffold_4929 2526458 98 - 26641161 UGCAUUUG-GGCAAACUUUUUGACCUCCUUGGUUAUUAUUUAUGAAGCUAUUAGCAAAGUGUGUGAACAUAUUUGCCUUUAUAAAGCCAGCGCACACAU------------------ (((.....-(((........(((((.....)))))...(((((((((......(((((.((((....)))))))))))))))))))))...))).....------------------ ( -24.40, z-score = -1.49, R) >droAna3.scaffold_12913 222807 96 + 441482 UGCACUUU-GGCCAAC-AUUUGGCCUCCUUGGUUAUUAUUUAUGAAGCUAUUAGUAAAGUGUGUGAACAUAUUUGCUUUUAUAAAGCCAGGACACACA------------------- ........-(((((..-...)))))..(((((((.((((....(((((........(((((((....)))))))))))).))))))))))).......------------------- ( -25.40, z-score = -1.86, R) >dp4.chr4_group4 1754354 101 - 6586962 UGCAUUUUAGGCGUACAUUUUGGCCUCUUUGGUUAUUAUUUAUGAAGCUAUUAGCCCAGUGUGUGAACAUAUUUGCUUUUAUAAAGCCAACACACACGUAC---------------- (((......((((((.((..(((((.....)))))..)).))))..((.....)))).(((((((......((.((((.....)))).)))))))))))).---------------- ( -21.20, z-score = -0.59, R) >droPer1.super_10 755422 101 - 3432795 UGCAUUUUUGGCGUACAUUUUGGCCUCUUUGGUUAUUAUUUAUGAAGCUAUUAGCCCAGUGUGUGAACAUAUUUGCUUUUAUAAAGCCAACACACACGUAC---------------- (((.....(((((((.((..(((((.....)))))..)).))))..((.....)))))(((((((......((.((((.....)))).)))))))))))).---------------- ( -21.90, z-score = -0.81, R) >droVir3.scaffold_12963 9849977 115 - 20206255 UGCAUUUU-GGCCAACAUUUUGACCUCUUUGGUUAUUAUUUAUGAAGCUAUUAGUAAAGUGUGUGAACAUAUUUGCUUCUAUAAAGCCA-CACACUCUCGCAGAGAUACGCUCACAC .((....(-(((........(((((.....)))))...((((((((((........(((((((....)))))))))))).)))))))))-....(((.....)))....))...... ( -26.00, z-score = -1.65, R) >droGri2.scaffold_15252 5234781 115 + 17193109 UGCAUUUU-GGCCAACAUUUUGACCGCUUUGGUUAUUAUUUAUGAAGCUAUUAGUAAAGUGUGUGAACAUAUUUGCUUCUAUAAGGCCA-CACACUCUUACAGAGACACACUCACAC .......(-((((.......(((((.....)))))....(((((((((........(((((((....)))))))))))).)))))))))-....(((.....)))............ ( -26.30, z-score = -1.88, R) >consensus UGCAUUUG_GGCCAACUUUUUGACCUCCUUGGUUAUUAUUUAUGAAGCUAUUAGCAAAGUGUGUGAACAUAUUUGCCUUUAUAAAGCCAGCACACACAU__________________ .........(((........(((((.....)))))...(((((((((......(((.((((((....)))))))))))))))))))))............................. (-18.85 = -18.59 + -0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:11:30 2011