| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,658,797 – 6,658,913 |
| Length | 116 |
| Max. P | 0.553852 |
| Location | 6,658,797 – 6,658,913 |
|---|---|
| Length | 116 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 71.89 |
| Shannon entropy | 0.45202 |
| G+C content | 0.29027 |
| Mean single sequence MFE | -23.00 |
| Consensus MFE | -9.68 |
| Energy contribution | -10.37 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.553852 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6658797 116 - 21146708 UUUUAUAGGAAUAAAGCGUUAUUCAAUAUUUGCUGUACUAAUUAGUACCUUAAAUGACAAUGAAUCAUAAGGUAUUCACUUUUGUAUCUUUAUCUUGU----AGUUUGCGUUGUUCCCUU .......(((((((.((.........((((((..(((((....)))))..)))))).....((((.((((((((...((....)).....))))))))----.)))))).)))))))... ( -23.20, z-score = -2.25, R) >droSec1.super_1 4238454 116 - 14215200 UUUUAUAGGAAUAAAGUGUUAUUCAUUAUUUGCUGUACUAAUUAGUGUCUUAAAUGCCAAUGAAUCAUAAGGUAUACAAUUUUGUAUCUUUAUCUUGU----AGUUUGCUUUGUUCCCUU .......((((((((((...((((((((((((..(((((....)))).).))))))...)))))).((((((.(((((....))))))))))).....----.....))))))))))... ( -23.00, z-score = -2.42, R) >droSim1.chr2R_random 1829091 116 - 2996586 UUUUAUAGGAAUAAAGUGUUAUUCAUUAUUUGCUGUACUAAUUAGUGUCUUAAAUGCCAAUGAAUCAUAAGGUAUACAAUUUUGUAUCUUUAUCUUGU----AGUUUGCUUUGUUCCCUU .......((((((((((...((((((((((((..(((((....)))).).))))))...)))))).((((((.(((((....))))))))))).....----.....))))))))))... ( -23.00, z-score = -2.42, R) >droPer1.super_4 1143692 114 + 7162766 UCUCAGAAAAAUCUAGGG------AAAGUAUACAACACUAGUAAGGCCUUAUAAAACCAACAUUUAACGAUGUAACUGGCCUUGUGGCUUGAUCUAGUAAAAAGUUUAUUUGGUUUCUCU ..............((((------(((.((...((((((((..(((((..((((..((((((((....)))))...)))..)))))))))...))))).....)))....)).))))))) ( -22.80, z-score = -0.63, R) >consensus UUUUAUAGGAAUAAAGUGUUAUUCAAUAUUUGCUGUACUAAUUAGUGCCUUAAAUGCCAAUGAAUCAUAAGGUAUACAAUUUUGUAUCUUUAUCUUGU____AGUUUGCUUUGUUCCCUU .......((((((((((..................((((....))))...........(((.....((((((((................)))))))).....))).))))))))))... ( -9.68 = -10.37 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:23 2011