| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,654,204 – 6,654,292 |
| Length | 88 |
| Max. P | 0.652526 |
| Location | 6,654,204 – 6,654,292 |
|---|---|
| Length | 88 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 86.81 |
| Shannon entropy | 0.21731 |
| G+C content | 0.44271 |
| Mean single sequence MFE | -26.32 |
| Consensus MFE | -21.20 |
| Energy contribution | -21.64 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.652526 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6654204 88 + 21146708 AGUGUGGGUGACAAGUCAGCGUAGCAAACUCUGAUUGAUGUUGAUGCAAUUGCAAUGCAAUUGCAAAUGGAAACACUUGAGCUGAUCG---- ...((.(((..(((((((((((..((.....))....)))))))(((((((((...)))))))))..((....)))))).))).))..---- ( -24.90, z-score = -1.04, R) >droSim1.chr2R_random 1824393 79 + 2996586 AGUGUGGGUGACAAGUCAGAGCAGCAAACUCUGAUUGAUGUUGAUGCAAUUGCAAUGCAGUUGCAAAUGGAAACACUUG------------- (((((....((((((((((((.......))))))))..))))..(((((((((...))))))))).......)))))..------------- ( -25.50, z-score = -2.01, R) >droSec1.super_1 4233953 79 + 14215200 AGUGUGGGUGACAAGUCAGAGCAGCAAACUCUGAUUGAUGUUGAUGCAAUUGCAAUGCAGUUGCAAAUGGAAACACUUG------------- (((((....((((((((((((.......))))))))..))))..(((((((((...))))))))).......)))))..------------- ( -25.50, z-score = -2.01, R) >droYak2.chr2R 18636942 88 - 21139217 AGUGUGGGUGACAAGUCAAAGCAACAAACUCUGAUUGAUGUUGAUGCAAUUGCAGUCCAGUUGCAAAUGGAAACACUUGAGCUGAUCG---- ..((..(.((....(((((..(((((.....)).)))...))))).)).)..))(..(((((.(((.((....)).))))))))..).---- ( -20.30, z-score = 0.39, R) >droEre2.scaffold_4845 3464998 92 - 22589142 AGUGUGGGUGACAAGUCACAGCAACCAGCUCUGAUUGAUGUUGAUGCAAUUGCAAUCCAGUUGCAAGUGGAAACACUUGAGCUGAUCGCCCG .....((((((..(((((.(((.....))).)))))........(((....)))...(((((.((((((....))))))))))).)))))). ( -35.40, z-score = -3.15, R) >consensus AGUGUGGGUGACAAGUCAGAGCAGCAAACUCUGAUUGAUGUUGAUGCAAUUGCAAUGCAGUUGCAAAUGGAAACACUUGAGCUGAUCG____ (((((....((((((((((((.......))))))))..))))..((((((((.....)))))))).......)))))............... (-21.20 = -21.64 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:22 2011