| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,652,762 – 6,652,862 |
| Length | 100 |
| Max. P | 0.846285 |
| Location | 6,652,762 – 6,652,862 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 69.27 |
| Shannon entropy | 0.46120 |
| G+C content | 0.37431 |
| Mean single sequence MFE | -28.57 |
| Consensus MFE | -10.11 |
| Energy contribution | -10.05 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.41 |
| Mean z-score | -2.63 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.846285 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6652762 100 - 21146708 -----------ACUAUUUAAUUUCGAAACGCAGCUUAAAAAAUAAAGUGAACGGAUAGUUC-ACUUAUGUUGAUGAGUGGCUGCGGUC------AGGAGUCAGGUGCGUAAGUGUGUG -----------........(((((....(((((((.....((((((((((((.....))))-)))).)))).......)))))))...------.)))))((.(..(....)..).)) ( -31.30, z-score = -3.38, R) >droSec1.super_1 4232521 100 - 14215200 -----------ACUAUUUUAUUUCGAAACGCAGCUUAAAAAAUAAAGUGAACGGAUAGUUC-ACUUAUGUUGAUGAGAGCCUGCGGUC------AGGAGUCAGGUGCGUAAGUGUGUG -----------........(((((....((((((((....((((((((((((.....))))-)))).)))).....))).)))))...------.)))))((.(..(....)..).)) ( -28.80, z-score = -2.39, R) >droSim1.chr2R_random 1822919 100 - 2996586 -----------ACUAUUUUAUUUCGAAACGCAGCUUAAAAAAUAAAGUGAACGGAUAGUUC-ACUUAUGUUGAUGAGAGGCUGCGGUC------AGGAGUCAGGUGCGUAAGUGUGUG -----------........(((((....((((((((....((((((((((((.....))))-)))).))))......))))))))...------.)))))((.(..(....)..).)) ( -32.40, z-score = -3.73, R) >droGri2.scaffold_15245 5491324 116 - 18325388 AGUGUUUUAUAACAGUUUUCUACCAAAGCUAA--UUAAAACUUUUAUUGCAUACCAACUUUAAGUUGUGUUGAAGAGUGUCAAUAUUUCAAUUGAGAAAUUUGACAGGUAAUUGAAUA ..((((....))))((((..((((........--.....((((((...(((...((((.....)))))))..))))))(((((.(((((......)))))))))).))))...)))). ( -21.80, z-score = -1.00, R) >consensus ___________ACUAUUUUAUUUCGAAACGCAGCUUAAAAAAUAAAGUGAACGGAUAGUUC_ACUUAUGUUGAUGAGAGGCUGCGGUC______AGGAGUCAGGUGCGUAAGUGUGUG ...........................(((((.((((.......((((((((.....)))).))))..........(((((((.(.((........)).)))))))).))))))))). (-10.11 = -10.05 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:21 2011