| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,647,909 – 6,648,029 |
| Length | 120 |
| Max. P | 0.860701 |
| Location | 6,647,909 – 6,648,029 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 96.50 |
| Shannon entropy | 0.06224 |
| G+C content | 0.39232 |
| Mean single sequence MFE | -30.26 |
| Consensus MFE | -27.84 |
| Energy contribution | -28.68 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.860701 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6647909 120 + 21146708 AGUUACUUCGCUUCAAAGCCUCAAUUAAUUGUUAUUAGACCGGCCCCUAAUUUAAGUUAACAACCUUUUGGCCAUCAUCAGUGGUUGGCUAAAAGGGAAUUUUAAUUGGCUGUCUGUCGU .........(((....)))..................(((.(((..((((((.(((((.....((((((((((((((....))).))))))))))).))))).))))))..))).))).. ( -31.90, z-score = -2.14, R) >droEre2.scaffold_4845 3458889 119 - 22589142 AAUUACUUCGCUUCAAAGCCUCAAUUAAUUGUUAUUAGACCGGCCCCUAAUUUAAGUUAACAACCUUU-GGCCAUCGUCAUUGCUUGGCUAAAAGGGAAUUUUAAUUGCCUGUCUGCCGU .........(((....)))................(((((.(((....((((.(((((.....(((((-(((((.((....))..))))).))))).))))).))))))).))))).... ( -23.90, z-score = -0.45, R) >droYak2.chr2R 18628879 120 - 21139217 AAUUACUUCGCUUCAAAGCCUCAAUUAAUUGUUAUUAGACCCGCCCCUAAUUUAAGUUAACAACCUUUUGGCCAUCAUCAGUGGCUGGCUAAAAGGGAAUUUUAAUUGGCUGUCUGUCGU .........((..((.((((....((((((...(((((........)))))...))))))...((((((((((((((....))).)))))))))))...........))))...))..)) ( -29.50, z-score = -1.89, R) >droSec1.super_1 4227872 120 + 14215200 AAUUGCUUCGCUUCAAAGCCUCAAUUAAUUGUUAUUAGACCGGCCCCUAAUUUAAGUUAACAACCUUUUGGCCAUCAUCAGUGGUUGGCUAAAAGGGAAUUUUAAUUGGCUGUCUGUCGU (((((....(((....)))..)))))...........(((.(((..((((((.(((((.....((((((((((((((....))).))))))))))).))))).))))))..))).))).. ( -33.00, z-score = -2.37, R) >droSim1.chr2R 5254597 120 + 19596830 AAUUGCUUCGCUUCAAAGCCUCAAUUAAUUGUUAUUAGACCGGCCCCUAAUUUAAGUUAACAACCUUUUGGCCAUCAUCAGUGGUUGGCUAAAAGGGAAUUUUAAUUGGCUGUCUGUCGU (((((....(((....)))..)))))...........(((.(((..((((((.(((((.....((((((((((((((....))).))))))))))).))))).))))))..))).))).. ( -33.00, z-score = -2.37, R) >consensus AAUUACUUCGCUUCAAAGCCUCAAUUAAUUGUUAUUAGACCGGCCCCUAAUUUAAGUUAACAACCUUUUGGCCAUCAUCAGUGGUUGGCUAAAAGGGAAUUUUAAUUGGCUGUCUGUCGU .........(((....)))..................(((.(((..((((((.(((((.....((((((((((((((....))).))))))))))).))))).))))))..))).))).. (-27.84 = -28.68 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:19 2011