| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,647,225 – 6,647,342 |
| Length | 117 |
| Max. P | 0.885356 |
| Location | 6,647,225 – 6,647,342 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 86.36 |
| Shannon entropy | 0.26231 |
| G+C content | 0.42509 |
| Mean single sequence MFE | -31.58 |
| Consensus MFE | -22.60 |
| Energy contribution | -24.12 |
| Covariance contribution | 1.52 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.885356 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6647225 117 - 21146708 UGAUUGCCAGCGGUAAUUGACUGAAAUAAUUCAGUGUUUUUGUCGCU-CGUUCAGUCGGCUCUUCAUUAAUUCCGAUUU-GGCCAAUUUGGACGUAUGUCAAUUAGUUGGUCUGUUGUG (((..(((((((..((..(((((((....)))))).)..))..))))-.(......))))...))).......((((..-((((((((..(((....)))....)))))))).)))).. ( -30.70, z-score = -1.74, R) >droAna3.scaffold_13266 18140668 97 - 19884421 --------------AGCUGCCUGAAAUAAUUCAGUGUUUGUGGC------CGGACUGGGCUCUUCAUUAAUUCCGUUUUCGGCCAAUU--GACGUACGUCAAUUAGUUGGCCCACUGUG --------------.((..((((((....))))).....)..))------(((..((((((...........(((....)))..((((--(((....)))))))....))))))))).. ( -26.10, z-score = -0.91, R) >droEre2.scaffold_4845 3458224 116 + 22589142 UGAUUGCCAGCGGUAAUUGAGUGAAAUAAUUCAGUGUUUUUGCCGCUCCGUUCAGUUGGCUCUUCAUUAAUUCCGAUUU-GGCCAAUU--GACGUAUGUCAAUUAGUUGGUUUGUUGUG ((((((.(((((((((((((((......))))))).....))))))..(((.(((((((((..((.........))...-))))))))--))))..)).)))))).............. ( -32.40, z-score = -2.56, R) >droYak2.chr2R 18628200 115 + 21139217 UGAUUGCCGGCGGUAAUUGACUGAAAUAAUUCAGUGUUUUUGCCACU-CGUUCAGUCGGCUCUUCAUUAAUUCCGAUUU-GGCCUAUU--GAUGUAUGUCAAUUAGUUGGUCUGUUGUG (((..(((((((((((..(((((((....)))))).)..)))))...-......))))))...))).......((((..-((((.(((--(((........)))))).)))).)))).. ( -30.50, z-score = -2.03, R) >droSec1.super_1 4227199 115 - 14215200 UGAUUGCCGGCGGUAAUUGACUGAAAUAAUUCAGUGUUUUUGCCGCU-CGUUCAGUCGGGUCUUCAUUAAUUCCGAUUU-GGCCAAUU--GACGUAUGUCAAUUAGUUGGUCUGUUGUG (((..((.((((((((..(((((((....)))))).)..))))))))-.)))))((((((...........))))))..-((((((((--(((....))))....)))))))....... ( -35.00, z-score = -2.81, R) >droSim1.chr2R 5253925 115 - 19596830 UGAUUGCCGGCGGUAAUUGACUGAAAUAAUUCAGUGUUUUUGCCGCU-CGUUCAGUCGGCUCUUCAUUAAUUCCGAUUU-GGCCAAUU--GACGUAUGUCAAUUAGUUGGUCUGUUGUG .(((((.(((((((((..(((((((....)))))).)..))))))).-))..)))))................((((..-((((((((--(((....))))....))))))).)))).. ( -34.80, z-score = -2.87, R) >consensus UGAUUGCCGGCGGUAAUUGACUGAAAUAAUUCAGUGUUUUUGCCGCU_CGUUCAGUCGGCUCUUCAUUAAUUCCGAUUU_GGCCAAUU__GACGUAUGUCAAUUAGUUGGUCUGUUGUG .(((((..((((((((...((((((....))))))....)))))))).....)))))................((((...((((((((..(((....)))....)))))))).)))).. (-22.60 = -24.12 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:18 2011