| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,637,947 – 6,638,042 |
| Length | 95 |
| Max. P | 0.698297 |
| Location | 6,637,947 – 6,638,042 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 77.74 |
| Shannon entropy | 0.30874 |
| G+C content | 0.43344 |
| Mean single sequence MFE | -22.90 |
| Consensus MFE | -13.90 |
| Energy contribution | -13.90 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.698297 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6637947 95 - 21146708 UGCGGCCAAA--AAGAAAAAAUAGGAGAGGGUACGCGUUAAGUGUGAACGAAACGAGAAGGGCAGAGUUUGUACGCAAACAUGUAAAAAAUA-UAGCA----- .((.(((...--................(..(((((.....)))))..)....(.....))))...(((((....)))))............-..)).----- ( -17.60, z-score = -1.36, R) >droEre2.scaffold_4845 3449126 103 + 22589142 UGCAGCCAAAACAAAAAGGAAAUAUAGAGGGUACGCGUUAAGUGUGAACGCGACGCGAAGGGCAGAGUUUAUGCACAAACAUGUGCAAAAUACUCGCAUAGCA (((.(((...............(((.....)))((((((..(((....)))))))))...))).((((...((((((....))))))....)))))))..... ( -30.20, z-score = -2.82, R) >droYak2.chr2R 18618810 88 + 21139217 UGCAGCCCAA--AAAAAG-------AGAGGGUACGCGUUAAGUGUGAACGAGACGCGAAGGGCUGAGUUUAUACACAAACAUGCAAAAAAUA-CAGCA----- ..((((((..--......-------...(....)(((((..((....))..)))))...)))))).((((......)))).(((........-..)))----- ( -20.90, z-score = -1.86, R) >consensus UGCAGCCAAA__AAAAAG_AA____AGAGGGUACGCGUUAAGUGUGAACGAGACGCGAAGGGCAGAGUUUAUACACAAACAUGUAAAAAAUA_UAGCA_____ (((.(((.....................(..(((((.....)))))..)....(.....))))...((((......))))...............)))..... (-13.90 = -13.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:17 2011