| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,635,800 – 6,635,901 |
| Length | 101 |
| Max. P | 0.991722 |
| Location | 6,635,800 – 6,635,901 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 82.91 |
| Shannon entropy | 0.23546 |
| G+C content | 0.27429 |
| Mean single sequence MFE | -21.93 |
| Consensus MFE | -17.29 |
| Energy contribution | -16.97 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.94 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.49 |
| SVM RNA-class probability | 0.991722 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6635800 101 + 21146708 UCCAAAGGCAGUUUCUCUACAUAAAAGAAAAUAACAAAUAUGUUUUCUUUA-----------AAAGCUAUUAAAUAAUAAAAUGGUUUCCUUUGA-----UACAAGCCAAGAGAAAC ..........((((((((.....((((((((((.......)))))))))).-----------....................((((((.......-----...)))))))))))))) ( -19.00, z-score = -2.81, R) >droSec1.super_1 4216115 117 + 14215200 UCCAAAGGCAGUUUAUUUAAAUAAAAGAAAACAACAAGUAUGUUUUCUUUAGACUUUAAGUAAAAGCCGUUAAAUAAUAAAAUGGUUUCCUUUGACCAUAUACGAGCAAAGAAAAAC ......(((..((((((((((..((((((((((.......))))))))))....)))))))))).))).............((((((......)))))).................. ( -24.50, z-score = -3.66, R) >droSim1.chr2R 5242623 117 + 19596830 UUCCAAGGCAGUCUCUUUAAAUAAAAGAAAAUAACAAGUAUGUUUUCUUUAGACUUUAAGUAAAAGCCAUUAAAUAAUAAAAUGGUUUCCUUUGACCAUAUACGAGCAAAGGAAAAC ......((((((((.........((((((((((.......)))))))))))))))..........))).................(((((((((..(......)..))))))))).. ( -22.30, z-score = -2.35, R) >consensus UCCAAAGGCAGUUUCUUUAAAUAAAAGAAAAUAACAAGUAUGUUUUCUUUAGACUUUAAGUAAAAGCCAUUAAAUAAUAAAAUGGUUUCCUUUGACCAUAUACGAGCAAAGAAAAAC ..((((((...............((((((((((.......)))))))))).............((((((((.........))))))))))))))....................... (-17.29 = -16.97 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:14 2011