| Sequence ID | dm3.chr2L |
|---|---|
| Location | 278,334 – 278,461 |
| Length | 127 |
| Max. P | 0.848784 |
| Location | 278,334 – 278,461 |
|---|---|
| Length | 127 |
| Sequences | 5 |
| Columns | 152 |
| Reading direction | forward |
| Mean pairwise identity | 77.05 |
| Shannon entropy | 0.39062 |
| G+C content | 0.35942 |
| Mean single sequence MFE | -35.50 |
| Consensus MFE | -18.06 |
| Energy contribution | -20.36 |
| Covariance contribution | 2.30 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.848784 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 278334 127 + 23011544 UAAUAACAUCUAAUGUACCUAAUGAUUUCAAAAGGUGGGGCCGAGUCUGUAUGAAAAUACAGAUUGUCGCAUUAUUUUCUGAUAAGGAGGUGCAUUAGAAACAAGUUAAGCGCACAACUGUGAUU--------AC----------------- ........((((((((((((....(((..((((((((.(((..(((((((((....)))))))))))).)))).))))..)))....))))))))))))...........((((....))))...--------..----------------- ( -38.90, z-score = -4.43, R) >droEre2.scaffold_4929 329360 152 + 26641161 UAAUAGCAUCUAAUGUACCUAAUGAUUUCAAGGGGUGGAGUCGAGUCUGUAUAGAAAUACAGAUUGCCGCAUUAUUUUCUGAUAAGGAGGUGCAUUAGAAACAAGUUAAGCAGCUGAAUUCGACAUUCACACACUUAACGAUACUUUGCAAU .....(((((((((((((((..(....(((..((((((.((.((((((((((....))))))))).).)).))))))..)))..)..)))))))))))).....((((((....(((((.....)))))....)))))).......)))... ( -44.50, z-score = -3.93, R) >droYak2.chr2L 272504 134 + 22324452 UAAUAGCAUCUAAUGCACCUAAUGAAUUCGAGGGGUGGCGUCGCGUCUGUAUAGAAAUACAGAUUGUCGCAUUAAUUUCUGAUAAGGAGAUGCAUUAGCAACAAGUAGAGCCCACAAAUUUGAUA--------CUUUGCAAU---------- .....((((((....(((((..((....))..)))))(((.((.((((((((....)))))))))).))).................))))))....((((..((((................))--------))))))...---------- ( -34.39, z-score = -1.54, R) >droSec1.super_14 276154 142 + 2068291 UAACAGCAUAUAAUGUACCUAAUGAUUUCAAGGGGUGGGGCCGAGUCUGUAUUGAAAUACAUAUUGUCACAUUAUUAUCUGAUAAGGAAGUGUAUUAGAAACAAGUUAAGCACACAAAUUUGGC----------CUAACGAUAUUUUGCCAU .....(((...(((((((((..((....))..)))).(((((((((.(((.....(((((((.((((((.((....)).))))))....)))))))........((.....))))).)))))))----------))....))))).)))... ( -31.90, z-score = -0.97, R) >droSim1.chr2L 296580 138 + 22036055 UAAUAGCAUAUAAUGUA----AUGAUUUCAAGGGGUGGGGCCGAGUCUGUAUUGAAAUACAUAUUGUCACAUUAUUAUCUGAUAAGGAAGUGUAUUAGAAACAAGUUAAGCACACAAAUUUGGC----------CUAACGAUAUUUUGCCAU .....(((...(((((.----.((....))....((.(((((((((.(((.....(((((((.((((((.((....)).))))))....)))))))........((.....))))).)))))))----------)).)).))))).)))... ( -27.80, z-score = -0.23, R) >consensus UAAUAGCAUCUAAUGUACCUAAUGAUUUCAAGGGGUGGGGCCGAGUCUGUAUAGAAAUACAGAUUGUCGCAUUAUUUUCUGAUAAGGAGGUGCAUUAGAAACAAGUUAAGCACACAAAUUUGAC__________CUAACGAUA_UUUGC_AU ........((((((((((((....(((......((((.(((..(((((((((....)))))))))))).)))).......)))....))))))))))))..................................................... (-18.06 = -20.36 + 2.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:05:27 2011