| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,635,398 – 6,635,510 |
| Length | 112 |
| Max. P | 0.741445 |
| Location | 6,635,398 – 6,635,510 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.60 |
| Shannon entropy | 0.30917 |
| G+C content | 0.47907 |
| Mean single sequence MFE | -33.78 |
| Consensus MFE | -26.84 |
| Energy contribution | -27.16 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.741445 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6635398 112 - 21146708 AACAAAAUGUAGCAAGGAACG--------UGGGUAUUGUAGUUGGGCUGAAUGGUUUGCGGUAUCUGGUUGGCAUUGUAUUACAGGCUCUUUGGGCCAACAAGAUGCCGAAACUCUUGGG ............(((((....--------(.((((((...(((((.(..((.((((((..((((...(....)...))))..)))))).))..).)))))..)))))).)...))))).. ( -34.50, z-score = -1.79, R) >droSim1.chr2R 5242221 112 - 19596830 AACAAAAUGUAGCAAGGAACG--------UGGGCAUUGUAGUUGGGCGGAAUGGUUUGUGGUAUCUGGCUGGCAUUGUAUUACAGGCUCUUUGGGCCAACAAGAUGCCGAAACUCUUGGG ............(((((....--------(.((((((...(((((.(.(((.((((((((((((...(....)...)))))))))))).))).).)))))..)))))).)...))))).. ( -38.30, z-score = -2.61, R) >droSec1.super_1 4215728 103 - 14215200 ---------UAGCAAGGAACG--------UGGGUAUUGUACUUGGGCGGAAUGGUUUGUGGUAUCUGGCUGGCAUUGUAUUACAGGCUCUUUGGGCCAACAAGAUGCCGAAACUCUUGGG ---------...(((((....--------(.((((((....((((.(.(((.((((((((((((...(....)...)))))))))))).))).).))))...)))))).)...))))).. ( -33.00, z-score = -1.63, R) >droYak2.chr2R 18616294 119 + 21139217 AACAAAAUGUAGCAAGGAACGUGGUUAACUGGGUAUUGUAGUUCAGCAGAAUGGUUUGUGGUAUCUGGCUGGCAUUGUGUUACAGGCUCUUUGGG-CAACAAGAUGCCGAAACUCUUGGC ..(((..(((((((.........((((.(..(((((..(((..((......))..)))..)))))..).))))....)))))))((((((...(.-...).))).))).......))).. ( -31.12, z-score = 0.02, R) >droEre2.scaffold_4845 3446833 94 + 22589142 -----------------AACA-----AAAUGGGCAUUGUAGUUGAGCUGAAUGGUUUGUGGUAUCCGGCUGGCAUUGUACUGCAGGCUCUUUGGGCCAACAAGAUGCCGAAGCGCU---- -----------------....-----.....((((((...((((.(((.((.((((((..((((...(....)...))))..))))))..)).)))))))..))))))........---- ( -32.00, z-score = -1.05, R) >consensus AACAAAAUGUAGCAAGGAACG________UGGGUAUUGUAGUUGGGCGGAAUGGUUUGUGGUAUCUGGCUGGCAUUGUAUUACAGGCUCUUUGGGCCAACAAGAUGCCGAAACUCUUGGG ...............................((((((...(((((.(..((.((((((((((((...(....)...)))))))))))).))..).)))))..))))))............ (-26.84 = -27.16 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:14 2011