| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,619,591 – 6,619,688 |
| Length | 97 |
| Max. P | 0.645127 |
| Location | 6,619,591 – 6,619,688 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 92.16 |
| Shannon entropy | 0.13760 |
| G+C content | 0.58144 |
| Mean single sequence MFE | -28.98 |
| Consensus MFE | -20.34 |
| Energy contribution | -20.50 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.645127 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6619591 97 + 21146708 GUCGUCUGACCCCGGUCGCUAAUUGCUGCUAACCCCGCCAUAAUCGGGCCGCUGUUUGUGCCCACCCACAGGCCACAGACACGGCCCAAUGUCAUCU ......((((...(((.((.....)).)))...............((((((.((((((((.((.......)).))))))))))))))...))))... ( -34.10, z-score = -2.77, R) >droSim1.chr2R 5226137 97 + 19596830 GUCGUCUGACCCCGGUCGCUAAUUGCUACUAACCCAGCCAAAAUCGGCCCGCUGUUUGUGCCCACCCACAGGCCACAGACAGAGCCCAAUGUCAUCU ......((((...(((.((.....)).)))...............(((...(((((((((.((.......)).))))))))).)))....))))... ( -26.00, z-score = -1.85, R) >droSec1.super_1 4199896 97 + 14215200 GUCGUCUGACCCCGGUCGCUAAUUGCUACUAACCCAGCCAAAAUCGGCCCGCUGUUUGUGCCCACCCACAGGCCACAGACAGAGCCCAAUGUCAUCU ......((((...(((.((.....)).)))...............(((...(((((((((.((.......)).))))))))).)))....))))... ( -26.00, z-score = -1.85, R) >droYak2.chr2R 18599445 97 - 21139217 GUCAAAUGACCCGGGUCGCUAAUUGCUACUAACCCGACCGUAAUCGGCCCGCUGUUUGUGCCCACCCGCAGGCCACAGACACAUCCCAAUGUCAUCU .....(((((.(((((((...(((((.............)))))))))))).((((((((.((.......)).)))))))).........))))).. ( -27.62, z-score = -1.97, R) >droEre2.scaffold_4845 3431185 97 - 22589142 GUCAUCUGACCCGGGUCGCUAAUUGCCACUAACCCGGCCAUAAUCGACCCGCUGUUUGUGCCCACCCACAGGCCACAGACACAGCCCAAUGUCAUCU ......((((..((((((...((.(((........))).))...))))))((((((((((.((.......)).)))))..))))).....))))... ( -31.20, z-score = -3.41, R) >consensus GUCGUCUGACCCCGGUCGCUAAUUGCUACUAACCCAGCCAUAAUCGGCCCGCUGUUUGUGCCCACCCACAGGCCACAGACACAGCCCAAUGUCAUCU ......((((...(((((......(((........)))......)))))...((((((((.((.......)).)))))))).........))))... (-20.34 = -20.50 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:12 2011