| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,589,373 – 6,589,472 |
| Length | 99 |
| Max. P | 0.901688 |
| Location | 6,589,373 – 6,589,472 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 98.09 |
| Shannon entropy | 0.03537 |
| G+C content | 0.54156 |
| Mean single sequence MFE | -31.72 |
| Consensus MFE | -31.05 |
| Energy contribution | -31.05 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.901688 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6589373 99 + 21146708 GUGGCUGCUGUUCUGUUGCCUUUACUUCCUG-AAAUCCUGGCAGUUGGACAUAAAUCUCCUCCCUGCGAUACGCGCUAAUGGAGCGCGAGCAGAUCGCCG ..(((...(((((..(((((...........-.......)))))..)))))............((((....((((((.....)))))).))))...))). ( -31.77, z-score = -1.70, R) >droEre2.scaffold_4845 3401506 97 - 22589142 GUGGCUGCUGUUCUGUUGCCUUUACUUCCUGCAAAUCCUGGCAGUUGGACAUAAAUCUCCUCC-UGCGAUACGCGCUAAUGGAGCGCGAGCAGAUCGC-- ..(((.((......)).)))........((((........((((..(((........)))..)-)))....((((((.....)))))).)))).....-- ( -32.00, z-score = -1.51, R) >droYak2.chr2R 18563992 99 - 21139217 GUGGCUGCUGUUCUGUUGCCUUUACUUCCUG-AAAUCCUGGCAGUUGGACAUAAAUCUCCUCCUUGCGAUACGCGCUAAUGGAGCGCGAGCAGAUCGCCG (((((((((((((..(((((...........-.......)))))..)))).....................((((((.....))))))))))).)))).. ( -31.27, z-score = -1.51, R) >droSec1.super_1 4169602 99 + 14215200 GUGGCUGCUGUUCUGUUGCCUUUACUUCCUG-AAAUCCUGGCAGUUGGACAUAAAUCUCCUCCCUGCGAUACGCGCUAAUGGAGCGCGAGCAGAUCGCCG ..(((...(((((..(((((...........-.......)))))..)))))............((((....((((((.....)))))).))))...))). ( -31.77, z-score = -1.70, R) >droSim1.chr2R 5195581 99 + 19596830 GUGGCUGCUGUUCUGUUGCCUUUACUUCCUG-AAAUCCUGGCAGUUGGACAUAAAUCUCCUCCCUGCGAUACGCGCUAAUGGAGCGCGAGCAGAUCGCCG ..(((...(((((..(((((...........-.......)))))..)))))............((((....((((((.....)))))).))))...))). ( -31.77, z-score = -1.70, R) >consensus GUGGCUGCUGUUCUGUUGCCUUUACUUCCUG_AAAUCCUGGCAGUUGGACAUAAAUCUCCUCCCUGCGAUACGCGCUAAUGGAGCGCGAGCAGAUCGCCG (((((((((((((..(((((...................)))))..)))).....................((((((.....))))))))))).)))).. (-31.05 = -31.05 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:09 2011