| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,587,916 – 6,588,022 |
| Length | 106 |
| Max. P | 0.565533 |
| Location | 6,587,916 – 6,588,022 |
|---|---|
| Length | 106 |
| Sequences | 11 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.59 |
| Shannon entropy | 0.38643 |
| G+C content | 0.34066 |
| Mean single sequence MFE | -16.61 |
| Consensus MFE | -10.24 |
| Energy contribution | -10.25 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.565533 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2R 6587916 106 + 21146708 UAAAUUCCCCAUAAAACUGCGACUCC-------AAUGCGAAUUAAAUCGCAUUAACAUAAUCAACUUUA----CAACAACUAUAAA---AAUAAAUUCAAUGGGAUUUGCGCUCGACUGC ..................((((.(((-------(((((((......)))))))....(((......)))----.............---.............))).))))((......)) ( -15.10, z-score = -1.92, R) >droSim1.chr2R 5194110 106 + 19596830 UAAAUUCCCCAUAAAACUGCGACUCC-------AAUGCGAAUUAAAUCGCAUUAACAUAAUCAACUUUA----CAACAACUAUAAA---AAUAAAUUCAAUGGGAUUUGCGCUCGACUGC ..................((((.(((-------(((((((......)))))))....(((......)))----.............---.............))).))))((......)) ( -15.10, z-score = -1.92, R) >droSec1.super_1 4168124 106 + 14215200 UAAAUUCCCCAUAAAACUGCGACUCC-------AAUGCGAAUUAAAUCGCAUUAACAUAAUCAACUUUA----CAACAACUAUAAA---AAUAAAUUCAAUGGGAUUUGCGCUCGACUGC ..................((((.(((-------(((((((......)))))))....(((......)))----.............---.............))).))))((......)) ( -15.10, z-score = -1.92, R) >droYak2.chr2R 18562428 106 - 21139217 UAAAUUCCCCAUAAAACUGCGACUCC-------AAUGCGAAUUAAAUCGCAUUAACAUAAUCAACUUUA----CAACAACUAUAAA---AAUAAAUUCAAUGGGAUUUGCGCUCGACUGC ..................((((.(((-------(((((((......)))))))....(((......)))----.............---.............))).))))((......)) ( -15.10, z-score = -1.92, R) >droEre2.scaffold_4845 3400001 106 - 22589142 UAAAUUCCCCAUAAAACUGCGACUCC-------AAUGCGAAUUAAAGCGCAUUAACAUAAUCAACUUUA----CAACAACUAUAAA---AAUAAAUUCAAUGGGAUUUGCGCUCGACUGC ..................((((.(((-------((((((........))))))....(((......)))----.............---.............))).))))((......)) ( -13.50, z-score = -0.73, R) >droAna3.scaffold_13266 18075302 106 + 19884421 UAAAUUCCCCAUAAAACUGCGACUCC-------AAUGCGAAUUAAAUCGCAUUAACAUAAUCAACUUUA----CAACAACUAUAAA---AAUAAAUUCAAUGGGAUUUUCGCUUGACUGC ..................((((.(((-------(((((((......)))))))....(((......)))----.............---.............)))...))))........ ( -14.00, z-score = -1.89, R) >dp4.chr3 3719608 111 - 19779522 UAAAUUCCCCAUAAAGCCCCGAAGUCGGAUGCGAAUGCGAAUUGAAUCGCAUUAACAUAAUCAACUUUA----CAACA-CUAUAAA---AAUAAAUUCAAUGGGAUUUGCGCUUGACUG- .......(((((......(((....)))(((..(((((((......)))))))..)))...........----.....-.......---..........)))))...............- ( -20.90, z-score = -1.63, R) >droPer1.super_4 705513 110 + 7162766 UAAAUUCCCCAUAAAACCCCGAAGUCGGAUGCGAAUGCGAAUUGAAUCGCAUUAACAUAAUCAACUUUA----CA-CA-CUAUAAA---AAUAAAUUCAAUGGGAUUUGCGCUUGACUG- .......(((((......(((....)))(((..(((((((......)))))))..)))...........----..-..-.......---..........)))))...............- ( -20.90, z-score = -2.08, R) >droVir3.scaffold_12875 16580704 99 + 20611582 UAAAUUUGCCAUAAAACUGUUG-----------AAUGGCAUUAA-CCGGAAUUAACAUAAGCAGGAGG---------AACUAUAAAUUAAAUAAAUUCAAUGGGAUUUGCGCUUGAGUGC ......((((((..........-----------.))))))....-.........((.(((((((....---------..))..........(((((((....))))))).))))).)).. ( -15.00, z-score = 0.23, R) >droMoj3.scaffold_6496 19697153 109 - 26866924 UAAAUUUGCCAUAAAGCUGUUG-----------AACGCCAUUAAGCUGGCAUUAACAUAAGCAUAGCCAACUAUGCCAACUAUAAAUUAAAUAAAUUCAAUGGAAUUUGCGCUUCAAUGC .......((....((((.((((-----------...((((......))))..........((((((....))))))))))...........(((((((....))))))).))))....)) ( -22.40, z-score = -0.77, R) >droGri2.scaffold_15245 5413815 99 + 18325388 UAAAUUUGCCAUAAAACUGUGG-----------AAUUCCAUUAAACUGGGAUUAACAUUAGCAACGC----------AACUAUAAAUAAAAUAAAUUCAAUGGGAUUUACGCUUCACAGC ................((((((-----------(((((((......)))))))..............----------..............(((((((....)))))))....)))))). ( -15.60, z-score = -1.26, R) >consensus UAAAUUCCCCAUAAAACUGCGACUCC_______AAUGCGAAUUAAAUCGCAUUAACAUAAUCAACUUUA____CAACAACUAUAAA___AAUAAAUUCAAUGGGAUUUGCGCUUGACUGC ..................(((............(((((((......)))))))......................................(((((((....))))))))))........ (-10.24 = -10.25 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:08 2011