| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,586,647 – 6,586,737 |
| Length | 90 |
| Max. P | 0.577482 |
| Location | 6,586,647 – 6,586,737 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 75.78 |
| Shannon entropy | 0.45096 |
| G+C content | 0.39108 |
| Mean single sequence MFE | -21.68 |
| Consensus MFE | -11.11 |
| Energy contribution | -10.96 |
| Covariance contribution | -0.15 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.577482 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6586647 90 - 21146708 -CCAUUU-GCAAAUUUAUUCUGCGCCUUAUAGUUUGCAAAUGGCAAACACAGUUUGUUUGUGUCUUGAUGGGAAUUCAAACUUCUAGCCAAG -((((((-(((((((...............)))))))))))))...((((((.....))))))((((.(((((........)))))..)))) ( -23.16, z-score = -2.04, R) >droAna3.scaffold_13266 18074036 73 - 19884421 GCAGUUUGGCAGACUAACACUGAA----AUUGUUUAGAGGUUGUUCCAUCCGUGUAUAGGCAUC------GGGAUU----CUUUAAG----- .((((((((....)))).))))..----.....(((((((..(((((((((.......)).)).------))))))----)))))).----- ( -13.80, z-score = 0.31, R) >droEre2.scaffold_4845 3398752 84 + 22589142 -CCAUUU-GCAAAUUUAUUCUGCGC-UUAUAGUUUGCAGAUGGCAAACAUGGUUUGUUUGUGUCUUGAU-GGCAGU----CUUCUAGCCAAG -.(((((-(((((((..........-....))))))))))))(((((((.....))))))).......(-(((((.----...)).)))).. ( -24.54, z-score = -2.15, R) >droYak2.chr2R 18561147 86 + 21139217 -CUAUUU-GCAAAUUUAUUCUGCGCUUUAUAGUUUGCAGAUGGCAAACAUAGUUUGUUUGUGUCUUGAUGGGAAGU----CUUCUCGCCAAG -.(((((-(((((((...............))))))))))))(((((((.....)))))))..((((.(((((...----..))))).)))) ( -22.66, z-score = -1.98, R) >droSec1.super_1 4166915 90 - 14215200 -CCAUUU-GCAAAUUUAUUCUGCGCUUUAUAGUUUGCAGAUGGUAAACACAGUUUGUUUGUGUCUUGAUGGGAAUUCAAACUUCUAGCCAAG -((((((-(((((((...............)))))))))))))...((((((.....))))))((((.(((((........)))))..)))) ( -23.46, z-score = -2.20, R) >droSim1.chr2R 5192861 90 - 19596830 -CCAUUU-GCAAAUUUAUUCUGCGCUUUAUAGUUUGCAGAUGGCAAACACAGCUUGUUUGUGUCUUGAUGGGAAUUCAAACUUCUAGCCAAG -.(((((-(((((((...............))))))))))))(((((((.....)))))))..((((.(((((........)))))..)))) ( -22.46, z-score = -1.26, R) >consensus _CCAUUU_GCAAAUUUAUUCUGCGCUUUAUAGUUUGCAGAUGGCAAACACAGUUUGUUUGUGUCUUGAUGGGAAUU____CUUCUAGCCAAG .((((((.(((((((...............)))))))))))))...((((((.....))))))((((...((((.......))))...)))) (-11.11 = -10.96 + -0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:07 2011