| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,586,415 – 6,586,472 |
| Length | 57 |
| Max. P | 0.867055 |
| Location | 6,586,415 – 6,586,472 |
|---|---|
| Length | 57 |
| Sequences | 6 |
| Columns | 70 |
| Reading direction | reverse |
| Mean pairwise identity | 67.64 |
| Shannon entropy | 0.54580 |
| G+C content | 0.47201 |
| Mean single sequence MFE | -14.30 |
| Consensus MFE | -7.36 |
| Energy contribution | -8.55 |
| Covariance contribution | 1.19 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.867055 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6586415 57 - 21146708 ---------UAU-AAAUCACGC---AAAACUAUCAUGCCCCUGGAGCAAAAGUACUCAAAGGGGUAUCUG ---------...-.........---.........((((((((.(((........)))..))))))))... ( -14.00, z-score = -2.59, R) >droSim1.chr2R 5192629 57 - 19596830 ---------UAU-AAAUCACGC---AAAACUAUCAUGCCCCUGGAGCAAAAGUACUCAAAGGGGUAUCUG ---------...-.........---.........((((((((.(((........)))..))))))))... ( -14.00, z-score = -2.59, R) >droSec1.super_1 4166683 57 - 14215200 ---------UAU-AAAUCACGC---AAAACUAUCAUGCCCCUGGAGCAAAAGUACUCAAAGGGGUAUCUG ---------...-.........---.........((((((((.(((........)))..))))))))... ( -14.00, z-score = -2.59, R) >droYak2.chr2R 18560961 60 + 21139217 ---------UAG-AAAGCAUGCUCGCAAACUAGCAUGCCCCUCGAGGAAACGUACGCAAAGGGGUAUCUG ---------(((-(..(((((((........)))))))((((((.(....)...))...))))...)))) ( -17.80, z-score = -1.84, R) >droEre2.scaffold_4845 3398525 58 + 22589142 ---------UACAAAAUCACAG---CAAACUGGCAUGCCCCUCGUGGAAGUGGACUCAAAGGGGUAUCUG ---------..........(((---....)))..((((((((..(((........))).))))))))... ( -13.40, z-score = -0.34, R) >droAna3.scaffold_13266 18073868 67 - 19884421 AGCUCCUUCCAGGAAUUCCUAU---CCAGCCCGGAGAGCGCUCCACUUCGCCGACUUUAAAGGGUAUUCG ..........(((....)))..---...((((..(((((((........).)).))))...))))..... ( -12.60, z-score = 1.13, R) >consensus _________UAU_AAAUCACGC___AAAACUAGCAUGCCCCUCGAGCAAAAGUACUCAAAGGGGUAUCUG ..................................((((((((.(((........)))..))))))))... ( -7.36 = -8.55 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:06 2011