| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,581,217 – 6,581,319 |
| Length | 102 |
| Max. P | 0.733856 |
| Location | 6,581,217 – 6,581,319 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 82.02 |
| Shannon entropy | 0.29774 |
| G+C content | 0.43628 |
| Mean single sequence MFE | -28.75 |
| Consensus MFE | -20.34 |
| Energy contribution | -21.60 |
| Covariance contribution | 1.26 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.733856 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6581217 102 + 21146708 -----------AAACACUCGGUAUUCAAUAUGGGCGUGAACGUCACGAAACCAGGUUCAAAUGGACAGGAUUUCGAUUUGAAUUCCGAUU-----UGGCAGGCAGAUAAAAUUUGCCG -----------......((((.((((((....((((....)))).(((((((..((((....)))).)).)))))..)))))).))))..-----.....(((((((...))))))). ( -33.20, z-score = -3.49, R) >droEre2.scaffold_4845 3393593 103 - 22589142 ---------UGCAACAUUCGGCAUUCGAUUUGGGCGUGAACGUCACGAAACCAGGUUCAAAUGGAUAGGAUUUCGGUUUGGUUUCAGAUU------GCUGGCCAGAUAAAAUUAGCUG ---------..........(((...(((((((((((....))))((.(((((((((((.........)))))).))))).))..))))))------)...)))............... ( -27.40, z-score = -0.92, R) >droYak2.chr2R 18555723 118 - 21139217 CACUCGGUAUUCGGUAUUCUGUAUUCGAUUUGGGCGUGAACGUCACGAAACCAGGUUCCAUUGGACAGGAUUUCGAUUCAGAUUUGGACUCAGAUUGGAAGGCAGAUAAAAUUAGCUG ....((((.........(((((.(((((((((((((((.....))))...(((((((..((((((......))))))...))))))).)))))))))))..)))))........)))) ( -31.33, z-score = -1.00, R) >droSec1.super_1 4161549 102 + 14215200 -----------AAACACUCGGUAUUCAAUAUGGGCGUGAACGUCACGAAACCAGGUUCAAAUGGACAGGAUUUCGAUUUGGAUUACGAUU-----UGGCAGGCAGAUAAAAUUAGCUG -----------......(((..((((((....((((....)))).(((((((..((((....)))).)).)))))..))))))..)))..-----.....(((.(((...))).))). ( -23.00, z-score = -1.12, R) >droSim1.chr2R 5187482 102 + 19596830 -----------AAGCACUCGGUAUUCAAUAUGGGCGUGAACGUCACGAAACCAGGUUCAAAUGGACAGGAUUUCGAUUUGGAUUCCGAUU-----UGGCAGGCAGAUAAAAUUAGCUG -----------..((..((((.((((((....((((....)))).(((((((..((((....)))).)).)))))..)))))).))))..-----..)).(((.(((...))).))). ( -28.80, z-score = -2.15, R) >consensus ___________AAACACUCGGUAUUCAAUAUGGGCGUGAACGUCACGAAACCAGGUUCAAAUGGACAGGAUUUCGAUUUGGAUUCCGAUU_____UGGCAGGCAGAUAAAAUUAGCUG .................((((.((((((....((((....)))).(((((((..((((....)))).)).)))))..)))))).))))............(((.(((...))).))). (-20.34 = -21.60 + 1.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:05 2011