| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,471,492 – 2,471,583 |
| Length | 91 |
| Max. P | 0.523233 |
| Location | 2,471,492 – 2,471,583 |
|---|---|
| Length | 91 |
| Sequences | 9 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 65.07 |
| Shannon entropy | 0.64886 |
| G+C content | 0.39108 |
| Mean single sequence MFE | -21.29 |
| Consensus MFE | -7.32 |
| Energy contribution | -6.98 |
| Covariance contribution | -0.34 |
| Combinations/Pair | 1.90 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.523233 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2471492 91 + 23011544 -----UCCCAAAAUUUAUACUCGUUCAAAUUUGC--UUGGGAAUUCCCAAAGUGCAAA---------AGCACCUCUGGCA--------AGUUUUUUGCUUAAGUCUUUUGUUUGG -----..(((((......(((.((..((((((((--(((((....))))).((((...---------.)))).....)))--------)))))...))...)))......))))) ( -22.80, z-score = -2.37, R) >droSim1.chr2L 2432144 89 + 22036055 -----UCCCAAAAUUUAUACUCGUUCAAAUUUGC--UUGGGAAUUCCCAAA-UGCAAA---------AGCACCUCUGGCA--------AGUUUUUUGCUUAAGUCUUUUGUUGG- -----..((((.......(((.((..((((((((--(((((....))))).-(((...---------.)))......)))--------)))))...))...)))......))))- ( -18.42, z-score = -1.22, R) >droSec1.super_5 645091 90 + 5866729 -----UCCCAAAAUUUAUACUCGUUCAAAUUUGC--UGGGGAAUUCCCAAA-UGCAAA---------AGCACCUCUGGCA--------AGUUUUUUGCUUAAGUCUUUUGUUUGG -----..(((((......(((.((..((((((((--(.(((....)))...-(((...---------.))).....))))--------)))))...))...)))......))))) ( -19.50, z-score = -1.05, R) >droYak2.chr2L 2462619 90 + 22324452 -----UCCCAAAAUUUAUACUCGUUCAAAUUUGC--UUGGGAAUUCCCAAA-UGCAAA---------AGCAUCUCUGGCA--------AGUUUUUUGCUUAAGUCUUUUGUUUGG -----..(((((......(((.((..((((((((--(((((....)))))(-(((...---------.)))).....)))--------)))))...))...)))......))))) ( -20.60, z-score = -2.17, R) >droEre2.scaffold_4929 2516009 90 + 26641161 -----UCCCAAAAUUUAUACUCGUUCAAAUUUGC--UUGGGAAUUCCCAAA-UGCGAA---------AGCACCUCUGGCA--------AGUUUUUUGCUUAAGUCUUUUGUUUGG -----..(((((......(((.((..((((((((--(((((....))))).-(((...---------.)))......)))--------)))))...))...)))......))))) ( -23.60, z-score = -2.79, R) >dp4.chr4_group4 1742918 107 + 6586962 -----UGCAAUAAUUUAUUGAACUUCAA-UUUGU--UGGGGAAUUCCCCAGCCAUAGAUCCCAGCCGAAUAACUCUUUCAGCUCCGGCAGUUUGUGGCCCAAGUCUUUUGUUUUG -----..............((((....(-((((.--(((((....)))))(((((((((.(((((.(((.......))).)))..))..))))))))).))))).....)))).. ( -27.70, z-score = -1.77, R) >droPer1.super_10 744807 107 + 3432795 -----UGCAAUAAUUUAUUGAACUUCAA-UUUGU--UGGGGAAUUCCCCAGCCAUAGAUCCCAGCCGAAUAACUCUUUCAGCUCCGGCAGUUUGUGGCCCAAGUCUUUUGUUUUG -----..............((((....(-((((.--(((((....)))))(((((((((.(((((.(((.......))).)))..))..))))))))).))))).....)))).. ( -27.70, z-score = -1.77, R) >droWil1.scaffold_180703 942437 98 - 3946847 UCUCUCUCUCUCUCUCACUCUAUACUGUAUUUGGCAUUUGGAAUUCCCCAUUUUUGAA------------UUCCCCAACAGCA-----AGUUUGUGGCUUAAGUCUUUUGUAUAU ....................((((((((..((((.....(((((((.........)))------------))))))))..)))-----.......(((....)))....))))). ( -13.60, z-score = -0.31, R) >droVir3.scaffold_12963 10368104 82 - 20206255 -----------AACUUGAACUGCUUUCAAUC------GGGUAACUUAUACGAUGCAGGC--------GUAGCAGCUAGCA--------AGUUCGUUGCCUAAGUCUUUUGUAUGU -----------...(((((.....)))))..------(((((((....((..(((.(((--------......))).)))--------.))..)))))))............... ( -17.70, z-score = 0.50, R) >consensus _____UCCCAAAAUUUAUACUCGUUCAAAUUUGC__UUGGGAAUUCCCAAA_UGCAAA_________AGCACCUCUGGCA________AGUUUUUUGCUUAAGUCUUUUGUUUGG .............................(((((..(((((....)))))...)))))......................................................... ( -7.32 = -6.98 + -0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:11:26 2011