| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,572,642 – 6,572,733 |
| Length | 91 |
| Max. P | 0.806708 |
| Location | 6,572,642 – 6,572,733 |
|---|---|
| Length | 91 |
| Sequences | 9 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 75.34 |
| Shannon entropy | 0.52854 |
| G+C content | 0.52509 |
| Mean single sequence MFE | -21.59 |
| Consensus MFE | -12.92 |
| Energy contribution | -12.86 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.806708 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6572642 91 + 21146708 UGCGUGCCCUGCAGGGGUGAUUAACCUUUGAUUUCGCCCCUCGUCCACAUUUUGCCACUUUUCAACUUCCCUCUUGGCAUUCGAUGCUAUC .(((((..(.(.((((((((.............))))))))))..)))....(((((.................)))))......)).... ( -22.15, z-score = -1.81, R) >droSim1.chr2R 5178934 91 + 19596830 UGCGUGCCCUGCAGGGGUGAUUAACCUUUGAUUUCGCCCCUCGUCCACAUUUUGCCACUUUUCAACUUCCCUCUUGGCAUUCGAUGCUAUC .(((((..(.(.((((((((.............))))))))))..)))....(((((.................)))))......)).... ( -22.15, z-score = -1.81, R) >droSec1.super_1 4153020 91 + 14215200 UGCGUGCCCUGCAGGGGUGAUUAACCUUUGAUUUCGCCCCUCGUCCACAUUUUGCCACUUUUCAACAUCUCUCUUGGCAUUCGAUGCUAUC .(((((..(.(.((((((((.............))))))))))..)))....(((((.................)))))......)).... ( -22.15, z-score = -1.67, R) >droYak2.chr2R 18547182 91 - 21139217 UGCGUGCCCUGCAGGGGUGAUUAACCUUUGAUUUCGCCCCUCGUCCACAUUUCGCCACUUUUCAACUUCCCUCUUGGCAUUCGAUGCUAUC .(((((..(.(.((((((((.............))))))))))..))).....((((.................)))).......)).... ( -21.75, z-score = -1.60, R) >droEre2.scaffold_4845 3385037 91 - 22589142 UGCGUGCCCUGCAGGGGUGAUUAACCUUUGAUUUCGCCCCUCGUCCACAUAUCGCCACUUUUCAACUUCCCUCUUGGCAUUCGAUGCUAUC .(((((..(.(.((((((((.............))))))))))..))).....((((.................)))).......)).... ( -21.75, z-score = -1.55, R) >droAna3.scaffold_13266 18060570 91 + 19884421 UGCAUGCCCUGCAGGGGUGAUUAACCUUUGAUUUGCCACCCCCAGCCAGCCCGGCCACUUUUCAACUUCCCUCUUGGCAUUCGAUGCUAUC .(.(((((.....((((((.................))))))..(((.....)))....................))))).)......... ( -19.93, z-score = 0.63, R) >droPer1.super_4 691533 73 + 7162766 GGCAUGCCCUGCAGGGGUGAUUAACCCUUGAUUUCGCUC--------------GCCCCUU----ACCUCGGACAUGGCAUUAGAUGCCGUC (((..((....(((((((.....))))))).....))..--------------)))((..----.....))..(((((((...))))))). ( -24.30, z-score = -1.34, R) >dp4.chr3 3706398 73 - 19779522 GGCAUGCCCUGCAGGGGUGAUUAACCCUUGAUUUCGCUC--------------GCCCCUU----ACCACGGACAUGGCAUUCGAUGCCAUC (((..((....(((((((.....))))))).....))..--------------)))((..----.....))..(((((((...))))))). ( -24.70, z-score = -1.74, R) >droGri2.scaffold_15245 5394292 78 + 18325388 ---GCGCCAUA-AGGGGUGAUUAACCUUUGGUUUGUGGCCAC---------UUGCUGCCUUUCGAUUGCCAUAUCACUAACUGAUUCCAGC ---(.((((((-((((((.....))))....)))))))))..---------..((((....(((.(((.........))).)))...)))) ( -15.40, z-score = 1.03, R) >consensus UGCGUGCCCUGCAGGGGUGAUUAACCUUUGAUUUCGCCCCUCGUCCACAUUUUGCCACUUUUCAACUUCCCUCUUGGCAUUCGAUGCUAUC .((((......(((((((.....))))))).......................((((.................)))).....)))).... (-12.92 = -12.86 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:03 2011