| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,567,834 – 6,567,926 |
| Length | 92 |
| Max. P | 0.964423 |
| Location | 6,567,834 – 6,567,926 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 82.45 |
| Shannon entropy | 0.30852 |
| G+C content | 0.43686 |
| Mean single sequence MFE | -29.42 |
| Consensus MFE | -19.41 |
| Energy contribution | -19.92 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.53 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.74 |
| SVM RNA-class probability | 0.964423 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6567834 92 + 21146708 ---------------UGAUGGUUAUCCAUUUGAUGGCUAUCCAUAAAGUUGGCUACGUUGCGGCUUUGGAAACUCUCGCACGGAGUGAAUGGCCAAAACG-ACUUAAU ---------------.((((((((((.....))))))))))....((((((((......))((((......(((((.....)))))....))))....))-))))... ( -28.40, z-score = -2.54, R) >droSim1.chr2R 5172717 92 + 19596830 ---------------UGAUGGUUAUCCAUUUGAUGGCUAUCCAUAAAGUUGGCUAAGCUGCGGCUUUGGAAACUCUCGCCCGGAGUGAAUGGCCAAAACG-ACUUAAU ---------------.((((((((((.....)))))))))).......(((((((.(((.((((...(....)....).))).)))...)))))))....-....... ( -29.10, z-score = -2.33, R) >droSec1.super_1 4148262 107 + 14215200 UGAUGGUUAUCCAUUUGAUGGCUAUCCAUUUGAUGGCUAUCCAUAAAGUUGGCUAAGCUGCGGCUUUGGAAACUCUCGCCCGGAGUGAAUGGCCAAAACG-ACUUAAU .(((((....))))).((((((((((.....)))))))))).......(((((((.(((.((((...(....)....).))).)))...)))))))....-....... ( -35.10, z-score = -2.70, R) >droYak2.chr2R 18542294 92 - 21139217 ---------------UGAUGGUUAUUCAUUUGAUGGCUAUCCAUAAAGUUGGCUAAGCUGCGGCUUUGGAUACUCUCGUCCGAAAUGAAUAGCCAAAGAG-AUUUAAU ---------------...((((((((((((((((((.((((((..((((((.(......)))))))))))))...)))))..))))))))))))).....-....... ( -29.10, z-score = -3.17, R) >droEre2.scaffold_4845 3380354 93 - 22589142 ---------------UGAUGGUUAUCCAUUUGAUGGCUAUCCAUAAAGUUCACUAAGCUGCGGCUUUGGCAACUCUCGUCCGGAGUGAAUAGCCCAAACGGAUUUAAU ---------------.((((((((((.....))))))))))....((((((...((((....)))).(((.(((((.....))))).....))).....))))))... ( -23.30, z-score = -0.66, R) >droAna3.scaffold_13266 18055914 89 + 19884421 ----------------GAUGGUUAUCCUGUUGAUGGCCAUCCAUAAAGUUGGCUUAGUUGCGGUUAAGGAAACACUCGCCGAGAGUGAAUGG---AAUCGCAAUUAAU ----------------((((((((((.....))))))))))............((((((((((((..(....(((((.....)))))..)..---)))))))))))). ( -31.50, z-score = -3.78, R) >consensus _______________UGAUGGUUAUCCAUUUGAUGGCUAUCCAUAAAGUUGGCUAAGCUGCGGCUUUGGAAACUCUCGCCCGGAGUGAAUGGCCAAAACG_ACUUAAU ................((((((((((.....)))))))))).......(((((((.(((.((((...(....)....)).)).)))...)))))))............ (-19.41 = -19.92 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:02 2011