| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,565,640 – 6,565,730 |
| Length | 90 |
| Max. P | 0.604306 |
| Location | 6,565,640 – 6,565,730 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 83.42 |
| Shannon entropy | 0.28042 |
| G+C content | 0.40363 |
| Mean single sequence MFE | -18.92 |
| Consensus MFE | -15.96 |
| Energy contribution | -16.20 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.604306 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6565640 90 - 21146708 CAUUUGUCGGGCGGAUGGCACUUGACUUUCGGAGUGCAUAUCGUAUAUAAAUCACGCCCUAACACCUUAAACUCAAUUUAACUUAGUUUG---------- ........(((((((((((((((........)))))).))))(.........).)))))........((((((...........))))))---------- ( -18.70, z-score = -1.27, R) >droEre2.scaffold_4845 3378123 98 + 22589142 AAUUUGUCGGGCGGAAGGCACUUGACUUUCGCAGUGCACAUGGCAUAUAAAUCACGCCCUAACACCUUUAACUUAAUU--ACUCAAUUUGAUUUACUUUG ........(((((((((((....).)))))...((((.....))))........)))))...................--.................... ( -17.80, z-score = -0.87, R) >droYak2.chr2R 18540003 98 + 21139217 AAUUUGUCGGCCGGAUGGCACUUGACUUUCGGAGUGCAUUUGGCAUAUAAAUCACGCCCUAACACCUUAAACUUAAU--AACGUAAUAUAACUCACUUUG .((((((..((((((((.(((((........)))))))))))))..)))))).........................--..................... ( -18.60, z-score = -1.03, R) >droSec1.super_1 4146035 90 - 14215200 CAUUUGUCGGGCGGAUGGCACUUGACUUUCAGAGUGCAUAGCGUAUAUAAAUCACGCCCUAACACCUUAAACUCAAUUUAACUUAGUUUG---------- ........((((((((.((((((........))))))(((.....)))..))).)))))........((((((...........))))))---------- ( -19.40, z-score = -1.37, R) >droSim1.chr2R 5170499 100 - 19596830 CAUUUGUCGGGCGGAUGGCACUUGACUUUCGGAGUGCAUAGCGUAUAUAAAUCACGCCCUAACACCUUAAACUCAAUUUAACUCAAUUUAACUUAGUUUG ........((((((((.((((((........))))))(((.....)))..))).)))))........((((((.((.((((......)))).)))))))) ( -20.10, z-score = -1.20, R) >consensus CAUUUGUCGGGCGGAUGGCACUUGACUUUCGGAGUGCAUAUCGUAUAUAAAUCACGCCCUAACACCUUAAACUCAAUUUAACUUAAUUUGA_U_A_UUUG ........((((((((.(((((((.....)).))))).............))).)))))......................................... (-15.96 = -16.20 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:01 2011