| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,563,306 – 6,563,397 |
| Length | 91 |
| Max. P | 0.961706 |
| Location | 6,563,306 – 6,563,397 |
|---|---|
| Length | 91 |
| Sequences | 8 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 69.17 |
| Shannon entropy | 0.60425 |
| G+C content | 0.52134 |
| Mean single sequence MFE | -31.69 |
| Consensus MFE | -12.80 |
| Energy contribution | -12.29 |
| Covariance contribution | -0.51 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.70 |
| SVM RNA-class probability | 0.961706 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6563306 91 - 21146708 ---GCCGGCAUGGAUAUCGAAUGGAUUGACUGAGGUUAGUUCGCCGUGCGAGUUGG-CUAUUCGCAGUGAAUGUGGCAUCAGAAGCCGGAAAAAA ---.(((((.......((((.....))))((((.((((((((((..(((((((...-..))))))))))))).)))).))))..)))))...... ( -31.80, z-score = -2.23, R) >droPer1.super_4 684102 91 - 7162766 CAAACCGGC-CGGCUGACUG--CGAUUGACUGAGGUUAGUUCAGAGCAGGCCUCAAGGUGUCUCUAG-GAACGAUUCAGGGGAAGCCACAGAGGG ....(((((-(.(((..(((--.(((((((....))))))))))))).))))....(((.(((((.(-((....))).))))).))).....)). ( -32.10, z-score = -1.19, R) >dp4.chr3 3697166 91 + 19779522 CAAACCGGC-CGGCUGACUG--CGAUUGACUGAGGUUAGUUCAGAGCAGGCCUCAAGGUGUCUCUAG-GAACGAUUCGGGGGAAGCCACAGAGGG ....(((((-(.(((..(((--.(((((((....))))))))))))).))))....(((.(((((.(-((....))).))))).))).....)). ( -32.10, z-score = -0.98, R) >droAna3.scaffold_13266 18051903 72 - 19884421 --GGCUGGC-CGGCUUUC-----GAUUGACUGAGGUUAGUUAG----GUGAGUUGA-CAGUCUGCCA----------GCCAGAAGCCAGAAAAGA --(((((((-.((((.((-----((((.(((...........)----)).))))))-.)))).))))----------)))............... ( -29.30, z-score = -3.18, R) >droEre2.scaffold_4845 3375931 91 + 22589142 ---GCCGGCUUGGAUUUCAAAUGGAUUGACUGAGGUUAGUUCGCCUUGCGAGUUGA-CAAUUCGCAGUGCAUGUGGCAUCAGAAGCCGGAAAAAA ---.(((((((.(((.(((...((((((((....))))))))((.((((((((...-..)))))))).))...))).)))..)))))))...... ( -35.50, z-score = -3.39, R) >droYak2.chr2R 18537655 92 + 21139217 ---GCCGGCUUGGAUUUCUCAUGGAUUGACUGAGGUUAGUUCGCCGUGCGAGUUGGACAAUUCUCAGUGAAUGUGGCAUCAGAAGCCGGAAAAAA ---.(((((((.(((...((((..(((.(((((((...(((((.(......).)))))...))))))).))))))).)))..)))))))...... ( -30.60, z-score = -1.70, R) >droSec1.super_1 4143648 91 - 14215200 ---GCCGGCAUGGAUAUCGAAUGGAUUGACUGAGGUUAGUUCGCCGUGCGAGUUGG-CUAUUCGCAGUGAAUGUGGCAUCAGAAGCCGGAAAAAA ---.(((((.......((((.....))))((((.((((((((((..(((((((...-..))))))))))))).)))).))))..)))))...... ( -31.80, z-score = -2.23, R) >droSim1.chr2R 5168119 91 - 19596830 ---GCCGGCAUGGAUAUCGAAUGGAUUGACUGAGGUUAGUUCGCCGAGCGAGUUGG-CUAUUCGCAGUGAAUGUGGCAUCAGAAGCCGGAAAAAA ---.(((((.......((((.....))))((((.((((((((((...((((((...-..)))))).)))))).)))).))))..)))))...... ( -30.30, z-score = -1.88, R) >consensus ___GCCGGC_UGGAUAUCGAAUGGAUUGACUGAGGUUAGUUCGCCGUGCGAGUUGA_CUAUUCGCAGUGAAUGUGGCAUCAGAAGCCGGAAAAAA ....(((((..............(((((((....)))))))......(((............)))...................)))))...... (-12.80 = -12.29 + -0.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:01 2011