| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,546,934 – 6,546,991 |
| Length | 57 |
| Max. P | 0.682143 |
| Location | 6,546,934 – 6,546,991 |
|---|---|
| Length | 57 |
| Sequences | 4 |
| Columns | 73 |
| Reading direction | reverse |
| Mean pairwise identity | 47.83 |
| Shannon entropy | 0.78391 |
| G+C content | 0.51038 |
| Mean single sequence MFE | -18.05 |
| Consensus MFE | -5.74 |
| Energy contribution | -5.67 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.71 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.682143 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6546934 57 - 21146708 ----------------AAGUUCAUACUCGAUAACCAAUGGGAGUCGAGUGCGACCCCUAAAGGCGUACAUGCU ----------------..........(((((..((...))..)))))(((((.((......)))))))..... ( -15.00, z-score = -1.43, R) >droSim1.chrU 5095447 73 - 15797150 CGUUUCCUACAUAUACAUAUAUAUUGUCGCCGAGCGACGGUGCUGGAGGAGGGGUGCUAUAGGCACACAUAUU ..((((((.(((((....)))(((((((((...))))))))).)).)))))).((((.....))))....... ( -18.60, z-score = -0.49, R) >droSec1.super_104 52300 69 + 95517 CGUUUCCUACAU----AUAUAUAUUGUCGCCGAGCGACGGUGCUGGAGGAGAGGUGCUAUAGGCACACAUAUU ..((((((.((.----.....(((((((((...))))))))).)).)))))).((((.....))))....... ( -19.70, z-score = -1.32, R) >droYak2.chrU 22929218 54 + 28119190 ------------------CCCCAUACCGGGAAACCAAUGGGAACCAGACACGGCCCCCAAAGGCGUGUAUCU- ------------------.(((((...((....)).)))))......(((((.((......)))))))....- ( -18.90, z-score = -1.78, R) >consensus ________________AUAUACAUACUCGCCAACCAACGGGACUCGAGGACGGCCCCUAAAGGCACACAUAUU ......................................(((((((......)))))))............... ( -5.74 = -5.67 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:12:55 2011