| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,541,765 – 6,541,815 |
| Length | 50 |
| Max. P | 0.932660 |
| Location | 6,541,765 – 6,541,815 |
|---|---|
| Length | 50 |
| Sequences | 4 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 95.33 |
| Shannon entropy | 0.07245 |
| G+C content | 0.50000 |
| Mean single sequence MFE | -14.03 |
| Consensus MFE | -13.00 |
| Energy contribution | -13.50 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.743441 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6541765 50 + 21146708 CCGGAGGGCAUUCGGUUUAUGGCUUUUAAAUCGAACUCGUAACUCCGUGC .(((((.((.(((((((((.......)))))))))...))..)))))... ( -14.60, z-score = -1.74, R) >droEre2.scaffold_4845 3361648 50 - 22589142 CCGGAGGGCAUUCGGUGUAUGGCAUUUAAAUCAAACUGGUAACUCCGUGC .(((((.....(((((...(((........))).)))))...)))))... ( -11.20, z-score = -0.34, R) >droYak2.chr2R 18520198 50 - 21139217 CCGGAGGGCAUUCGGUUUAUGGCAUUUAAAUCGAACUGGUAACUCCGUGC .(((((.((.(((((((((.......)))))))))...))..)))))... ( -15.70, z-score = -2.17, R) >droSim1.chr2R 5153650 50 + 19596830 CCGGAGGGCAUUCGGUUUAUGGCUUUUAAAUCGAACUCGUAACUCCGUGC .(((((.((.(((((((((.......)))))))))...))..)))))... ( -14.60, z-score = -1.74, R) >consensus CCGGAGGGCAUUCGGUUUAUGGCAUUUAAAUCGAACUCGUAACUCCGUGC .(((((.((.(((((((((.......)))))))))...))..)))))... (-13.00 = -13.50 + 0.50)
| Location | 6,541,765 – 6,541,815 |
|---|---|
| Length | 50 |
| Sequences | 4 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 95.33 |
| Shannon entropy | 0.07245 |
| G+C content | 0.50000 |
| Mean single sequence MFE | -10.98 |
| Consensus MFE | -10.96 |
| Energy contribution | -11.03 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.52 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.37 |
| SVM RNA-class probability | 0.932660 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6541765 50 - 21146708 GCACGGAGUUACGAGUUCGAUUUAAAAGCCAUAAACCGAAUGCCCUCCGG ...(((((......(((((.((((.......)))).)))))...))))). ( -12.00, z-score = -1.81, R) >droEre2.scaffold_4845 3361648 50 + 22589142 GCACGGAGUUACCAGUUUGAUUUAAAUGCCAUACACCGAAUGCCCUCCGG ...(((((......(((((.................)))))...))))). ( -7.93, z-score = -0.35, R) >droYak2.chr2R 18520198 50 + 21139217 GCACGGAGUUACCAGUUCGAUUUAAAUGCCAUAAACCGAAUGCCCUCCGG ...(((((......(((((.((((.......)))).)))))...))))). ( -12.00, z-score = -2.13, R) >droSim1.chr2R 5153650 50 - 19596830 GCACGGAGUUACGAGUUCGAUUUAAAAGCCAUAAACCGAAUGCCCUCCGG ...(((((......(((((.((((.......)))).)))))...))))). ( -12.00, z-score = -1.81, R) >consensus GCACGGAGUUACCAGUUCGAUUUAAAAGCCAUAAACCGAAUGCCCUCCGG ...(((((......(((((.((((.......)))).)))))...))))). (-10.96 = -11.03 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:12:53 2011