| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,538,973 – 6,539,076 |
| Length | 103 |
| Max. P | 0.899045 |
| Location | 6,538,973 – 6,539,076 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 75.21 |
| Shannon entropy | 0.45545 |
| G+C content | 0.37435 |
| Mean single sequence MFE | -23.38 |
| Consensus MFE | -14.28 |
| Energy contribution | -14.65 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.899045 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6538973 103 + 21146708 --------AAAAAAAAUUGCUCUAAAAUUGUGGGAACUAAGCGGUUUCUAAGAAAAAAUGUUGCACAUCCCAGAAUCAGGUGGGCGGAUUAGUACGAACAAUUAAUCCCUU --------..........((((....(((.(((((....((((.((((...))))...)))).....))))).))).....))))((((((((.......))))))))... ( -23.90, z-score = -1.62, R) >droEre2.scaffold_4845 3355879 101 - 22589142 ----------AAAAAAUUGCUCUAAUAUUGUGGAAACUAAGCGGUUUCUGAGAAAAAAUGUUGCACAUCCUGAAAUCAGGUGGGCGGAUUAGUACGGACAAUUAAUCCUUU ----------........(((((((((((.((((((((....))))))))......))))))).....((((....)))).))))((((((((.......))))))))... ( -24.60, z-score = -2.05, R) >droYak2.chr2R 18517530 101 - 21139217 ----------AAAAAAUUGCUCUAAAAUUGUGGGAACUAAGCGGUUUCUAAGAAAAAAAGUUGCACAUCCUAGAAUCAGGUGGAUGGAUUAGUACGAACAAUUAAUCCUUU ----------.......(((.((.......((((((((....))))))))........))..))).((((...........))))((((((((.......))))))))... ( -18.16, z-score = -0.45, R) >droSec1.super_1 4126404 103 + 14215200 --------AAAAAAAAUUGCUCUAAAAUUGUGGGAACUAAGCGGUUUCUAAGAAAAAAUGUUGCACAUCCCAGAAUCAGGUGGGCGGAUUAGUACGAACAAUUAAUCCCUU --------..........((((....(((.(((((....((((.((((...))))...)))).....))))).))).....))))((((((((.......))))))))... ( -23.90, z-score = -1.62, R) >droSim1.chr2R 5150954 102 + 19596830 ---------AAAAAAAUUGCUCUAAAAUUGUGGGAACUAAGCGGUUUCUAAGAAAAAAUGUUGCACAUCCCAGAAUCAGGUGGGCGGAUUAGUACGAACAAUUAAUCCCUU ---------.........((((....(((.(((((....((((.((((...))))...)))).....))))).))).....))))((((((((.......))))))))... ( -23.90, z-score = -1.57, R) >droMoj3.scaffold_6540 26689610 104 + 34148556 CAGCUUAAAGUCGAGAAAACCCCCUGACUGAAAGUACAUAAGAGUGCGCGAGUCAGAAAUAACUCCAUUU--GAAUGAGGCGGAUUAACUAGU-CAAACGACUAGUC---- ..((((.((((.(((........(((((((...((((......)))).).))))))......))).))))--.....))))......((((((-(....))))))).---- ( -25.84, z-score = -2.46, R) >consensus _________AAAAAAAUUGCUCUAAAAUUGUGGGAACUAAGCGGUUUCUAAGAAAAAAUGUUGCACAUCCCAGAAUCAGGUGGGCGGAUUAGUACGAACAAUUAAUCCCUU ..................((((....(((.(((((....((((.((((...))))...)))).....))))).))).....))))((((((((.......))))))))... (-14.28 = -14.65 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:12:51 2011