Locus 358

Sequence ID dm3.chr2L
Location 2,468,942 – 2,469,042
Length 100
Max. P 0.709433
window488

overview

Window 8

Location 2,468,942 – 2,469,042
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 68.74
Shannon entropy 0.56854
G+C content 0.50023
Mean single sequence MFE -26.88
Consensus MFE -15.17
Energy contribution -16.89
Covariance contribution 1.72
Combinations/Pair 1.27
Mean z-score -0.90
Structure conservation index 0.56
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.47
SVM RNA-class probability 0.709433
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 2468942 100 - 23011544
CCGCUGAAAUAUGAGUCGGAGUUCAGGGCGCUGGCGAUUGAGACCCACCUCGAAACUGAAUCUCAAUCCAAGUCCGAGUCCGAGUCCGAUUCCGAUCCCA
............((((((((.(((.((((.(.(((((((((((..((.........))..))))))))...))).).)))))))))))))))........ ( -30.40, z-score =  -1.00, R)
>droEre2.scaffold_4929 2513306 94 - 26641161
CCGCUGAAAUAUGAGCCGGAGUUCAGGGCGCUGGCGAUUGAGACCCACCUCGAACCACUAUCUGAAUCCGAGUCCGAGUCCGAGUCCGAUUCCA------
............(..(((((.((((((....(((...(((((......))))).)))...)))))))))).)..)(((((.......)))))..------ ( -22.80, z-score =   1.03, R)
>droSec1.super_5 642533 100 - 5866729
CCGCUGAAAUAUGAGUCGGAGUUCAGGGCGCUGUCGAUUGAGACCCACCUCGAAUCUGAAUCUCAAUCCAAGCCCGAGUCCGAGUCCGAUUCCGAUUCCA
............(((((((((((..(((((((...((((((((..((.........))..))))))))..))).((....)).))))))))))))))).. ( -32.40, z-score =  -1.94, R)
>droSim1.chr2L 2429464 100 - 22036055
CCGCUGAAAUAUGAGUCGGAGUUCAGGGCGCUGUCGAUUGAGACCCACCUCGAAUCUGAAUCUCAAUCCAAGCCCGAGUCCGAGUCCGAUUCCGAUUCCA
............(((((((((((..(((((((...((((((((..((.........))..))))))))..))).((....)).))))))))))))))).. ( -32.40, z-score =  -1.94, R)
>droVir3.scaffold_12963 9831372 91 - 20206255
-------AAUAUUAAAUAUUUAUAGCAGAAAUGAAGUGUAAAAAGCUGAUGAAAUAUGAACGCUAUUUUGAAGUUCAAUGUGAGUUCAGUUGGCGUCA--
-------..(((((..(.((((((.((....))...)))))).)..))))).....(((.(((((..(((((.(((.....)))))))).))))))))-- ( -16.40, z-score =  -0.63, R)
>consensus
CCGCUGAAAUAUGAGUCGGAGUUCAGGGCGCUGGCGAUUGAGACCCACCUCGAAUCUGAAUCUCAAUCCAAGCCCGAGUCCGAGUCCGAUUCCGAUCCCA
............((((((((.(((.(((((((...((((((((.................))))))))..)))....)))))))))))))))........ (-15.17 = -16.89 +   1.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:11:25 2011