| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,508,208 – 6,508,311 |
| Length | 103 |
| Max. P | 0.937108 |
| Location | 6,508,208 – 6,508,311 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 95.31 |
| Shannon entropy | 0.07957 |
| G+C content | 0.42762 |
| Mean single sequence MFE | -18.93 |
| Consensus MFE | -18.90 |
| Energy contribution | -18.90 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.53 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.41 |
| SVM RNA-class probability | 0.937108 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6508208 103 + 21146708 ACACACUCAUGCAAAUUGCAUGCCUGAUUUCACCAAUUGAUUGCAUGCAAUUGUUUUUU---------CCUUCGACUUCCACUUGUUUGCUCAUCCCGAGCCAAAUCCUUGC ..........(((((((((((((..((((.........)))))))))))))).......---------................((((((((.....))).)))))...))) ( -18.90, z-score = -1.64, R) >droSim1.chr2R 5134937 103 + 19596830 ACACACUCAUGCAAAUUGCAUGCCUGAUUUCACCAAUUGAUUGCAUGCAAUUGUUUUUU---------CCUUCGACUUCCACUUGUUUGCUCAUCCCGAGCCAAAUCCUUGC ..........(((((((((((((..((((.........)))))))))))))).......---------................((((((((.....))).)))))...))) ( -18.90, z-score = -1.64, R) >droSec1.super_1 4110486 103 + 14215200 ACACACUCAUGCAAAUUGCAUGCCUGAUUUCACCAAUUGAUUGCAUGCAAUUGUUUUUU---------CCUUCGACUUCCACUUGUUUGCUCAUCCCGAGCCAAAUCCUUGC ..........(((((((((((((..((((.........)))))))))))))).......---------................((((((((.....))).)))))...))) ( -18.90, z-score = -1.64, R) >droYak2.chr2R 18501101 103 - 21139217 ACACACUCAUGCAAAUUGCAUGCCUGAUUUCCCCAAUUGAUUGCAUGCAAUUGUUUUUU---------CCUUCGACUUCCACUUGUUUGCUCAUCCCGAGCCAAAUCCUUGC ..........(((((((((((((..((((.........)))))))))))))).......---------................((((((((.....))).)))))...))) ( -18.90, z-score = -1.97, R) >droEre2.scaffold_4845 3339760 112 - 22589142 ACACACUCAUGCAAAUUGCAUGCCUGAUUUCCCCAAUUGAUUGCAUGCAAUUGUGUUUUUUUCUGUUUCCUUCGACUUCCACUUGUUUGCUCAUCCAGAGCCAAAUCCUUGC (((.......(((((((((((((..((((.........)))))))))))))).))).......)))..................((((((((.....))).)))))...... ( -19.04, z-score = -0.78, R) >consensus ACACACUCAUGCAAAUUGCAUGCCUGAUUUCACCAAUUGAUUGCAUGCAAUUGUUUUUU_________CCUUCGACUUCCACUUGUUUGCUCAUCCCGAGCCAAAUCCUUGC ..........(((((((((((((..((((.........))))))))))))))................................((((((((.....))).)))))...))) (-18.90 = -18.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:12:49 2011