| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,497,693 – 6,497,802 |
| Length | 109 |
| Max. P | 0.783289 |
| Location | 6,497,693 – 6,497,802 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.68 |
| Shannon entropy | 0.28282 |
| G+C content | 0.41216 |
| Mean single sequence MFE | -30.73 |
| Consensus MFE | -18.38 |
| Energy contribution | -18.94 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.783289 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6497693 109 - 21146708 GAUUCAUAUA-----AUAAUAACGGAUACAAAGGC----UAGUUGCCACGUUUCAAGGAUAUAAUUGUAUGCAUCAACUCAGCAUUUUCAACCAAGGCUGUUUGAAGAAUGCGAGAAU-- (((.((((((-----((.(((.(.((.((...(((----.....)))..)).))...).))).)))))))).)))..(((.((((((((((.((....)).))).))))))))))...-- ( -26.50, z-score = -2.46, R) >droSim1.chr2R 5123901 114 - 19596830 GAUUCCCGCACUCAUAUAAUAUCGGAUACAAAGGC----UAGUUGCCCCGUUUCAAGGAUAUAAUUGUAUGCAUCAACUCAGCAUUUUCACCCAAGGCUGUUUGAAGAGUGCGAGAAU-- .((((.(((((((..........(.((((((.(((----.....)))((.......))......)))))).).((((..((((.............)))).)))).))))))).))))-- ( -33.72, z-score = -3.39, R) >droSec1.super_1 4099959 114 - 14215200 GAUUCACGCACUCAUAUAAUAUCGGAUACAAAGGC----UAGUUGCCCCGUUUCAAGGAUAUAAUUGUAUGCAUCAACUCAGCAUUUUCACCCAAGGCUGUUUGAAGAGUGCGAGAAU-- .((((.(((((((..........(.((((((.(((----.....)))((.......))......)))))).).((((..((((.............)))).)))).))))))).))))-- ( -33.62, z-score = -3.43, R) >droYak2.chr2R 18490147 117 + 21139217 GAUUCACGCACUCAUUUCAUACCGCAUACAAAGGCUGGUUAGUUGCCCCGUUUCAAGGAUAUAAUUGUAUGCAUCACCUCAGCAUUUUCGCCCAAGGCUGUUUGAUGAGUGUGAGUG--- ......((((((((((..(((((((((((((.(((.........)))((.......))......)))))))).........((......))....)).)))..))))))))))....--- ( -34.20, z-score = -2.20, R) >droEre2.scaffold_4845 3328872 108 + 22589142 -------GC-UUCAUUUCAUAUCGGAUGCAAAGGC----UAGUUGCUCCGUUUCAAGGAUAUAAUUGUAUGCAUCACCUUAGCAUUUUCGCACAAGGCUGUUUGAAGUGUGUGCGUGUAU -------((-..(((((((.((.(((((((...((----.(((((.(((.......)))..))))))).)))))).((((.((......))..))))).)).)))))))...))...... ( -25.60, z-score = 0.06, R) >consensus GAUUCACGCACUCAUAUAAUAUCGGAUACAAAGGC____UAGUUGCCCCGUUUCAAGGAUAUAAUUGUAUGCAUCAACUCAGCAUUUUCACCCAAGGCUGUUUGAAGAGUGCGAGAAU__ ......(((((((..........(.((((((.(((.........)))((.......))......)))))).).(((...((((.............))))..))).)))))))....... (-18.38 = -18.94 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:12:48 2011