| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,489,437 – 6,489,563 |
| Length | 126 |
| Max. P | 0.869944 |
| Location | 6,489,437 – 6,489,563 |
|---|---|
| Length | 126 |
| Sequences | 5 |
| Columns | 126 |
| Reading direction | reverse |
| Mean pairwise identity | 71.19 |
| Shannon entropy | 0.51162 |
| G+C content | 0.50421 |
| Mean single sequence MFE | -30.82 |
| Consensus MFE | -20.20 |
| Energy contribution | -20.36 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.869944 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6489437 126 - 21146708 UACAAAAAAAAAAAUCAGCAGAAAAAAAGCUGAGGCGGGGAAGGAAGAACAGUGGGUCGCUGGGCGGUAGGGAUUCAAAAGGGGGAUCCGUUAUUGAACACAACAUGCCAUUGGGGCGGCUUCAGA .............................((((((((..(.........(((((...)))))..((((((((((((.......)))))).))))))....)..).((((.....))))))))))). ( -30.30, z-score = -1.33, R) >droSim1.chr2R 5113433 118 - 19596830 --------AAAAAAAAAAGCAAAAAAAAGCUGAGGCGGGAAAGGAAGAACAGUGGGUCGCUGGGCGGUAGGGAUUCAAAGGGGGGGUCCGUUAUUGAACACAACAUGCCAUUGGGGCGGCUUCAGA --------.....................(((((((.(........(..(((((...)))))..)((((.((((((.......))))))(((....)))......)))).......).))))))). ( -29.70, z-score = -1.19, R) >droSec1.super_1 4091736 125 - 14215200 UAAAAAACAAAAAAAAAAGCAGAAAAAAGCUGAGGCGGGAAAGGAAGAACAGUGGGUCGCUGGGCGGUAGGGAUUCAAA-GGGGGGUCCGUUAUUGAACACAACAUGCCAUUGGGGCGGCUUCAGA .............................(((((((.(........(..(((((...)))))..)((((.((((((...-...))))))(((....)))......)))).......).))))))). ( -30.20, z-score = -1.53, R) >droYak2.chr2R 18481071 103 + 21139217 ----------AAAAAAAUCGAAAAAAUAACUAAGGCGG----GGAAAAACAGUGGG-------GCGGUAGGGAUUUGAA--GGGGGUCCGUUAUUGAACACAACAUGCCAUUGGGGCGGCUUCAGA ----------...................((.((((..----.........(((..-------.((((((((((((...--..)))))).))))))..)))....((((.....)))))))).)). ( -22.10, z-score = -0.59, R) >droAna3.scaffold_13266 17981256 110 - 19884421 -----------ACAUGGGGCGGCGAAAAAGGGGGGUUG-CUUGGUUAGUUGGUUGCCUGGCUGGC-GUAGGGGCUGAGCCCUGCUGUCCGUUAUGGA--ACAACAUGACA-UGGGGCGGCUUCAGA -----------...((((((.((......(((.(((..-....((((((..(....)..))))))-...(((((...)))))))).)))((((((..--....)))))).-....)).)))))).. ( -41.80, z-score = -0.93, R) >consensus ________AAAAAAAAAAGCAAAAAAAAGCUGAGGCGGGAAAGGAAGAACAGUGGGUCGCUGGGCGGUAGGGAUUCAAA_GGGGGGUCCGUUAUUGAACACAACAUGCCAUUGGGGCGGCUUCAGA .............................(((((((...............(((..........((((((((((((.......)))))).))))))..)))....((((.....))))))))))). (-20.20 = -20.36 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:12:47 2011