| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,487,477 – 6,487,542 |
| Length | 65 |
| Max. P | 0.776763 |
| Location | 6,487,477 – 6,487,542 |
|---|---|
| Length | 65 |
| Sequences | 6 |
| Columns | 72 |
| Reading direction | forward |
| Mean pairwise identity | 74.36 |
| Shannon entropy | 0.46399 |
| G+C content | 0.43235 |
| Mean single sequence MFE | -15.25 |
| Consensus MFE | -7.78 |
| Energy contribution | -7.75 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.776763 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6487477 65 + 21146708 -AGAAACUCUGCGAAAGCGAUAGGCGAAUAAGUUGCCAACGAAAUUUAUCGC--AAGACCGAAAGAGA---- -.....((((((....)).....((((.((((((........))))))))))--.........)))).---- ( -16.90, z-score = -2.79, R) >droSim1.chr2R 5111448 64 + 19596830 -AGAAACUUUGCUAAAGCGAUAGGCGAAUAAGUUGCCAACGAA-UUUAUCGG--AAGACCAAAAGAGC---- -.......((((....))))..(((((.....)))))......-....((..--..))..........---- ( -10.80, z-score = -0.73, R) >droSec1.super_1 4089793 65 + 14215200 -AGAAACUCUGCGAAAGCGAUAGGCGAAUAAGUUGCCAACGAAAUUUAUCAG--AAGACCGAAAGAGC---- -.....((((((....))....(((((.....)))))...............--.........)))).---- ( -14.10, z-score = -2.09, R) >droYak2.chr2R 18478943 65 - 21139217 -AGAAACUCUGCGAAAGCAAUUGGCGAAUAAGUUGCCAACGAAAUUUAUCAG--AAGACCGAAUAAAA---- -.((.....(((....))).(((((((.....))))))).........))..--..............---- ( -13.20, z-score = -2.30, R) >droEre2.scaffold_4845 3318649 65 - 22589142 -AGAAACUCUGCGAAAGCGAUUGGCGAAUAAGUUGCCAACGAAAUUUAUCGG--AGGACCGAAUAAAA---- -........(((....))).(((((((.....))))))).....((((((((--....))).))))).---- ( -16.80, z-score = -2.47, R) >droPer1.super_4 633912 72 + 7162766 GGAGCACUGGAUGGUGGAAAGGGGGGCACAACUUUCCAGAAAAACUUAUCAGCGGAGAUCGAACCCCCCAGA ....((((....))))....((((((......(((((................))))).....))))))... ( -19.69, z-score = 0.05, R) >consensus _AGAAACUCUGCGAAAGCGAUAGGCGAAUAAGUUGCCAACGAAAUUUAUCAG__AAGACCGAAAGAGA____ .........(((....)))...(((((.....)))))................................... ( -7.78 = -7.75 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:12:46 2011