| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,472,545 – 6,472,608 |
| Length | 63 |
| Max. P | 0.929307 |
| Location | 6,472,545 – 6,472,608 |
|---|---|
| Length | 63 |
| Sequences | 7 |
| Columns | 72 |
| Reading direction | forward |
| Mean pairwise identity | 62.20 |
| Shannon entropy | 0.70765 |
| G+C content | 0.56060 |
| Mean single sequence MFE | -15.59 |
| Consensus MFE | -4.89 |
| Energy contribution | -5.57 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.34 |
| SVM RNA-class probability | 0.929307 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6472545 63 + 21146708 GCCACAUAUCCAAUGUAUUGGCACCUCUGCAACUUC--AGUGCAACUCGGGGGCUCCAACCCCAA------- ((((.((((.....)))))))).....((((.(...--.)))))....((((.......))))..------- ( -16.70, z-score = -1.22, R) >droAna3.scaffold_13266 17972497 70 + 19884421 --CCCACACGUAUCUUUGCAACACCAUAGAGACCCCUAGCAGCCCCCUGGUAGCCCCCUUGCCAGACCCCGC --.......(..((((((........))))))..)...........(((((((.....)))))))....... ( -10.00, z-score = -0.52, R) >droEre2.scaffold_4845 3312515 53 - 22589142 GCCACAUAUCCAAUGUAUUGGCACCUCUGCAACG-------------CGGAGGCUCCAACCCCAAA------ ((((.((((.....)))))))).(((((((...)-------------)))))).............------ ( -15.70, z-score = -2.60, R) >droYak2.chr2R 18472654 52 - 21139217 GCCACAUAUCCAAUAUAUUGGCACCUCUGCAACU-------------CGGAGCCUCCAACCCCAA------- ((((.((((.....))))))))..(((((.....-------------))))).............------- ( -9.10, z-score = -1.87, R) >droSec1.super_1 4083579 63 + 14215200 GCCACAUAUCCAAUGUAUUGGCACCUCUGCAACUUC--ACUGCAACUCGGGGGCUCCAACCCCAA------- ((((.((((.....)))))))).....((((.....--..))))....((((.......))))..------- ( -16.80, z-score = -2.01, R) >droSim1.chr2R 5105221 63 + 19596830 GCCACAUAUCCAAUGUAUUGGCACCUCUGCAACUUC--ACUGCAACUCGGGGGCUCCAACCCCAA------- ((((.((((.....)))))))).....((((.....--..))))....((((.......))))..------- ( -16.80, z-score = -2.01, R) >droVir3.scaffold_12875 16459066 59 + 20611582 GCCGCAUUUUCAAU-CAACAGCAGCCCCGUAACGGG--GUUGCA---CAGGGUUUCCCCCCGCAC------- ...((.........-.....(((((((((...))))--))))).---..(((......)))))..------- ( -24.00, z-score = -3.97, R) >consensus GCCACAUAUCCAAUGUAUUGGCACCUCUGCAACUUC__ACUGCA_C_CGGGGGCUCCAACCCCAA_______ ((((..............))))..........................((((.......))))......... ( -4.89 = -5.57 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:12:42 2011