| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,468,760 – 6,468,829 |
| Length | 69 |
| Max. P | 0.989152 |
| Location | 6,468,760 – 6,468,829 |
|---|---|
| Length | 69 |
| Sequences | 4 |
| Columns | 69 |
| Reading direction | reverse |
| Mean pairwise identity | 96.61 |
| Shannon entropy | 0.05250 |
| G+C content | 0.54012 |
| Mean single sequence MFE | -27.65 |
| Consensus MFE | -27.36 |
| Energy contribution | -27.43 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.35 |
| SVM RNA-class probability | 0.989152 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6468760 69 - 21146708 AAGCAGAAUUCUCCCAGAGGCGCCUGCCUUUGGGACCUUGCCACAGUUUGGGGAUUUCGCUCUUUUUGC .(((..(((((((((((((((....))))))))))((..((....))..)))))))..)))........ ( -27.30, z-score = -2.37, R) >droEre2.scaffold_4845 3308389 68 + 22589142 AAGUAGAAGUCUCCCAGAGGCGCCUGCCUUUGGGACCUUGCCACAGUUUGGGGAUUUCGCUCUUUUUC- .(((.((((((((((((((((....))))))))))((..((....))..)).))))))))).......- ( -26.50, z-score = -2.32, R) >droYak2.chr2R 18468854 68 + 21139217 AAGCAGAAGUCUCCCAGAGGCGCCUGCCUUUGGGACCUUGCCACAGUUUGGGGAUUUCGCUCUUUUUC- .(((.((((((((((((((((....))))))))))((..((....))..)).))))))))).......- ( -28.40, z-score = -2.65, R) >droSec1.super_1 4079689 69 - 14215200 AAGCAGAAGUCUCCCAGAGGCGCCUGCCUUUGGGACCUUGCCACAGUUUGGGGAUUUCGCUCUUUUUGC .(((.((((((((((((((((....))))))))))((..((....))..)).)))))))))........ ( -28.40, z-score = -2.31, R) >consensus AAGCAGAAGUCUCCCAGAGGCGCCUGCCUUUGGGACCUUGCCACAGUUUGGGGAUUUCGCUCUUUUUC_ .(((.((((((((((((((((....))))))))))((..((....))..)).)))))))))........ (-27.36 = -27.43 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:12:41 2011