| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,458,149 – 6,458,199 |
| Length | 50 |
| Max. P | 0.569534 |
| Location | 6,458,149 – 6,458,199 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 61.33 |
| Shannon entropy | 0.54091 |
| G+C content | 0.36000 |
| Mean single sequence MFE | -9.40 |
| Consensus MFE | -5.25 |
| Energy contribution | -4.93 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.57 |
| Mean z-score | -0.88 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.569534 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6458149 50 + 21146708 CUCAGAUCUUGCUUUGAGCUCUUUUUCCUGGAAUAUUUGAUUCAGGAAUU ((((((......))))))......((((((((........)))))))).. ( -12.40, z-score = -1.44, R) >droSec1.super_1 4069093 50 + 14215200 CUCAAAUCUUACUUUGAGCACCUUUUCCCGGAAUAUUUGAUUUAGGAAAU ((((((......)))))).....(((((..((........))..))))). ( -8.40, z-score = -1.23, R) >droEre2.scaffold_4845 3297283 50 - 22589142 UUCAAAAUUGGGUUGCGACAGAUUUUCGAAAGGCACUGCAUUUUGGUAUU .(((((((((((((.(((.......)))...))).))).))))))).... ( -7.40, z-score = 0.02, R) >consensus CUCAAAUCUUGCUUUGAGCACAUUUUCCAGGAAUAUUUGAUUUAGGAAUU ((((((......))))))......((((((((........)))))))).. ( -5.25 = -4.93 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:12:39 2011