| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,467,281 – 2,467,348 |
| Length | 67 |
| Max. P | 0.614533 |
| Location | 2,467,281 – 2,467,348 |
|---|---|
| Length | 67 |
| Sequences | 10 |
| Columns | 76 |
| Reading direction | forward |
| Mean pairwise identity | 74.62 |
| Shannon entropy | 0.52742 |
| G+C content | 0.50362 |
| Mean single sequence MFE | -15.99 |
| Consensus MFE | -10.36 |
| Energy contribution | -10.77 |
| Covariance contribution | 0.41 |
| Combinations/Pair | 1.08 |
| Mean z-score | -0.68 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.614533 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2467281 67 + 23011544 CUCACCAGCUCACAGGCUCACAAAGAACACGACAAAGCGUUGAAAUCGUCGUGGCUUUUGUCCGAAC--------- .((...((((....)))).((((((..((((((..............))))))..))))))..))..--------- ( -14.84, z-score = -0.41, R) >droPer1.super_10 738351 58 + 3432795 ---UCGGACAGC--AUCGCACAAAGAACACGACAAAGCGUUGAAAUCGUCGUGGCUUUUGUCU------------- ---.........--...(.((((((..((((((..............))))))..))))))).------------- ( -12.74, z-score = -0.06, R) >dp4.chr4_group4 1737605 62 + 6586962 ---UCGGACAGC--AUCGCACAAAGAACACGACAAAGCGUUGAAAUCGUCGUGGCUUUUGUCUGUGC--------- ---.......((--((.(.((((((..((((((..............))))))..))))))).))))--------- ( -17.24, z-score = -0.70, R) >droAna3.scaffold_12913 209267 67 - 441482 UGGCAGAGGGAACAGACACCCAAAGAACACGACAAAGCGUUGAAAUCGUCGUGGCUUUUGUCUGAAC--------- .(((((((((........)))......((((((..............))))))...)))))).....--------- ( -16.84, z-score = -0.79, R) >droEre2.scaffold_4929 2511633 67 + 26641161 CUCGCCAGCUCACAGGCUCACAAAGAACACGACAAAGCGUUGAAAUCGUCGUGGCUUUUGUCCGAAC--------- .(((((........)))..((((((..((((((..............))))))..))))))..))..--------- ( -16.84, z-score = -0.70, R) >droSec1.super_5 640910 67 + 5866729 CUCACCAGCUCACAGGCUCACAAAGAACACGACAAAGCGUUGAAAUCGUCGUGGCUUUUGUCCGAAC--------- .((...((((....)))).((((((..((((((..............))))))..))))))..))..--------- ( -14.84, z-score = -0.41, R) >droSim1.chr2L 2427809 67 + 22036055 CUCACCAGCUCACAGGCUCACAAAGAACACGACAAAGCGUUGAAAUCGUCGUGGCUUUUGUCCGAAC--------- .((...((((....)))).((((((..((((((..............))))))..))))))..))..--------- ( -14.84, z-score = -0.41, R) >droVir3.scaffold_12963 9829048 76 + 20206255 CAGUCGGACAGACAAUAGCACAAAGAACACGACAAAGCGUUGAAAUCGUCGUGCCUUUUGUCUGGACCCGAUCCGC ..(((((.(((((((..((((...((...((((.....))))...))...))))...)))))))...))))).... ( -24.60, z-score = -2.71, R) >droGri2.scaffold_15252 5213507 73 - 17193109 CUCACUGACAGACAAUAGCACAAAGAACACGACAAAGCGUUGAAAUCGUCUUGCCUUUUGUCUGCCCCGGCAC--- ....(((.(((((((..(((....((...((((.....))))...))....)))...)))))))...)))...--- ( -15.30, z-score = -0.79, R) >droWil1.scaffold_180703 2995880 51 + 3946847 ----------------CGCACUGCGAACACGACAAAGCGUUGAAAUCGUCGUGGCUUUUGCCAGAAA--------- ----------------...((.((((...((((.....))))...)))).))(((....))).....--------- ( -11.80, z-score = 0.20, R) >consensus CUCACCAGCACACAGGCGCACAAAGAACACGACAAAGCGUUGAAAUCGUCGUGGCUUUUGUCUGAAC_________ ...................((((((..((((((..............))))))..))))))............... (-10.36 = -10.77 + 0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:11:24 2011