| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,435,114 – 6,435,187 |
| Length | 73 |
| Max. P | 0.850829 |
| Location | 6,435,114 – 6,435,187 |
|---|---|
| Length | 73 |
| Sequences | 5 |
| Columns | 73 |
| Reading direction | forward |
| Mean pairwise identity | 91.51 |
| Shannon entropy | 0.14255 |
| G+C content | 0.35890 |
| Mean single sequence MFE | -14.46 |
| Consensus MFE | -12.88 |
| Energy contribution | -12.48 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.850829 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6435114 73 + 21146708 UACUUCGUCUAAUGCUCGGGAUUAAAUUGUUUAUCCGGUAGCGUGGAUAAAUAUCAACCAUAAACAAAGGGCU ......((((...((((.((((..........)))).).)))((((...........)))).......)))). ( -13.60, z-score = -0.51, R) >droEre2.scaffold_4845 3273438 73 - 22589142 AACUUCGUCUAAUGCUCGGGAUUAAAUUGUUUAUCCUGCAGCGUGGAUAAAUAUCAACAAUAAACAAACAGCU ......(((((.((((((((((..........)))))).)))))))))......................... ( -15.10, z-score = -2.24, R) >droYak2.chr2R 18434579 73 - 21139217 AACUUCGUCUAAUGCUCGGGAUUAAAUUGUUUAUCCUGCAGCAUGGAUAAAUAUCAACAACAAACAAACAGUU ......(((((.((((((((((..........)))))).)))))))))......................... ( -15.50, z-score = -2.82, R) >droSec1.super_1 4046744 73 + 14215200 AACAUCGUCUAAUGCUCGGGAUUAAAUUGUUUAUCCGGUAGCGUAGAUAAAUAUCAACAAUAAACAAAGGGCU ......((((.((((((.((((..........)))).).))))).(((....))).............)))). ( -13.70, z-score = -1.54, R) >droSim1.chrU 4655854 73 - 15797150 AACAUCGUCUAAUGCUCGGGAUUAAAUUGUUUAUCCGGUAGCGUAGAUAAAUAUCAACAAUAAACAGAGGGUU ...(((.(((.((((((.((((..........)))).).))))).(((....)))..........))).))). ( -14.40, z-score = -1.63, R) >consensus AACUUCGUCUAAUGCUCGGGAUUAAAUUGUUUAUCCGGUAGCGUGGAUAAAUAUCAACAAUAAACAAAGGGCU ......(((((.(((((.((((..........)))).).)))))))))......................... (-12.88 = -12.48 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:12:38 2011