| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,434,527 – 6,434,629 |
| Length | 102 |
| Max. P | 0.958682 |
| Location | 6,434,527 – 6,434,629 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 96.69 |
| Shannon entropy | 0.05632 |
| G+C content | 0.58903 |
| Mean single sequence MFE | -27.84 |
| Consensus MFE | -26.42 |
| Energy contribution | -26.82 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.66 |
| SVM RNA-class probability | 0.958682 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6434527 102 + 21146708 CAUAGCCCAGAAAUCGAGCGGCAGCCAAGCAUGAUCCCCUCCGACCACA-GUUGCAACCCUAUAGACCUCCAUCCCUUCGAGCGGAUGUUGCUGCCGCUCCCU ...............((((((((((...(((((.((......)).))..-..)))...............((((((.....).)))))..))))))))))... ( -29.00, z-score = -2.56, R) >droSim1.chr2R 5066402 102 + 19596830 CAUAGCCCAGAAAUCGAGCGGCAGCCAAGCAUGAUCCCCUCCGAC-CCAAGUUGCAACCCUAUAGACCUCCAUCCCUUCGAGCGGAUGUUGCUGCCGCUCCCU ...............((((((((((..((((...(((.(((((((-....))))..........((......)).....))).)))))))))))))))))... ( -28.70, z-score = -2.60, R) >droSec1.super_1 4046187 102 + 14215200 CAUAGCCCAGAAAUCGAGCGGCAGCCAAGCAUGAUCCCCUCCGAC-AUAAGUUGCAACCCUAUAGACCUCCAUCCCUUCGAGCGGAUGUUGCUGCCGCUCCCU ...............((((((((((..((((...(((.(((((((-....))))..........((......)).....))).)))))))))))))))))... ( -29.20, z-score = -2.65, R) >droYak2.chr2R 18433988 102 - 21139217 CAUAGCCCAGAAAUCGAGCGGCAGCCAAGCAUGAUCCCCUCCGAGCACA-GUUGCAACCCUAUAGACCGCCAUCCCUUCGAGCGGAUGUUGCCGCCGCUCCCU ...............(((((((.((..(((((............(((..-..)))...........(((((........).))))))))))).)))))))... ( -28.20, z-score = -1.70, R) >droEre2.scaffold_4845 3272817 103 - 22589142 CAUAGCCCAGAAAUCGAGCGGCAGCCAAGCAUGAUCCCCUCCGACCACAAGUUGCAACCCUAUAGACCUCCAUCCCUUCGAGCGGAUGUUGCCGCCGCUCCCU ...............(((((((.((..((((...(((.(((((((.....))))..........((......)).....))).))))))))).)))))))... ( -24.10, z-score = -1.15, R) >consensus CAUAGCCCAGAAAUCGAGCGGCAGCCAAGCAUGAUCCCCUCCGACCACAAGUUGCAACCCUAUAGACCUCCAUCCCUUCGAGCGGAUGUUGCUGCCGCUCCCU ...............((((((((((...(((.....................)))...............((((((.....).)))))..))))))))))... (-26.42 = -26.82 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:12:37 2011