| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,429,039 – 6,429,173 |
| Length | 134 |
| Max. P | 0.669218 |
| Location | 6,429,039 – 6,429,173 |
|---|---|
| Length | 134 |
| Sequences | 8 |
| Columns | 141 |
| Reading direction | reverse |
| Mean pairwise identity | 74.48 |
| Shannon entropy | 0.48077 |
| G+C content | 0.50020 |
| Mean single sequence MFE | -37.55 |
| Consensus MFE | -19.33 |
| Energy contribution | -21.22 |
| Covariance contribution | 1.89 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.669218 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6429039 134 - 21146708 UCAGUCGUCAGUUUUUCUUCAGUGGCUUCGCGCGUCCGCAAUUUUCAGUGUGUGGUGCGUUGUUGCUGCUGCCUACU-CUUUUCUUUCUGCUCUCCACGGCAGCGGGAAAGGAAAAUACAUACACAUGCAUACAG------ ...((.((..((.(((...(((..((...(((((.(((((..........))))))))))....))..))).....(-(((((((..(((((......)))))..))))))))))).))..))))..........------ ( -37.50, z-score = -0.68, R) >droAna3.scaffold_13266 17905924 121 - 19884421 UCAGUCGUCAGUUUUUCUUCAGUGGCUCCGCGCGUCCGACAUUUC-----UGUGGUGCGUCGCUGCUGCUG----CU-CUUUCUGCUUUGCUCUCC---GCAGCAGGAAAGGAAAAUAC-UACAUACACAUACAC------ ......((.(((((((((((((..((..((((((.((.(((....-----))))))))).))..))..)))----..-.((((((((..((.....---))))))))))))))))).))-)))............------ ( -36.60, z-score = -1.50, R) >droEre2.scaffold_4845 3266567 134 + 22589142 UCAGUCGUCAGUUUUUCUUCAGUGGCUUCGCGCGUCCGCAAUUUUCAGUGUGUGGUGCGUUGUUGCUGCUGCCUACU-CUUUUCUUUCUGCUCUCCACGGCAGCGGGAAAGGAAAAUACAUACACAUGCAUACAG------ ...((.((..((.(((...(((..((...(((((.(((((..........))))))))))....))..))).....(-(((((((..(((((......)))))..))))))))))).))..))))..........------ ( -37.50, z-score = -0.68, R) >droYak2.chr2R 18427501 134 + 21139217 UCAGUCGUCAGUUUUUCUUCAGUGGCUUCGCGCGUCCGCAAUUUUCAGUGUGUGGUGCGUUGUUGCUGCUGCCUACU-CUUUUCUUUCUGCUCUCCACGGCAGCGGGAAAGGAAAAUACAUACACAUGCAUACAG------ ...((.((..((.(((...(((..((...(((((.(((((..........))))))))))....))..))).....(-(((((((..(((((......)))))..))))))))))).))..))))..........------ ( -37.50, z-score = -0.68, R) >droSec1.super_1 4040340 134 - 14215200 UCAGUCGUCAGUUUUUCUUCAGUGGCUUCGCGCGUCCGCAAUUUUCAGUGUGUGGUGCGUUGUUGCUGCUGCCUACU-CUUUUCUUUCUGCUCUCCACGGCAGCGGGAAAGGAAAAUACAUACACAUGCAUACAG------ ...((.((..((.(((...(((..((...(((((.(((((..........))))))))))....))..))).....(-(((((((..(((((......)))))..))))))))))).))..))))..........------ ( -37.50, z-score = -0.68, R) >droSim1.chr2R 5060408 133 - 19596830 UCAGUCGUCAGUUUUUCUUCAGUGGCUUCGCGCGUCCGCAAUUUUCAGUGUGUGGUGCGUUGUUGCUGCUG-CUACU-CUUUUCUUUCUGCUCUCCACGGCAGCGGGAAAGGAAAAUACAUACACAUGCAUACAG------ ...((.((..((.(((...(((..((...(((((.(((((..........))))))))))....))..)))-....(-(((((((..(((((......)))))..))))))))))).))..))))..........------ ( -37.50, z-score = -0.71, R) >droPer1.super_4 589265 132 - 7162766 -------UCACUCCGUCACU-UCCACUCCGCGCGUUCACAAUUCCUGUUGUGCGGUGUGGCUCUACUCUUCCUCUCUGCUCUGCUCUGCCUACUCCGCAGCAGCA-GCAAGGAAAAUACAUAUGAGCACACAUACUUACAU -------.............-..(((.(((((((...(((.....)))))))))).)))((((.....(((((..(((((((((............)))).))))-)..))))).........)))).............. ( -38.14, z-score = -3.52, R) >dp4.chr3 3604049 132 + 19779522 -------UCACUCCGUCACU-UCCACUCCGCGCGUUCACAAUUCCUGUUGUGCGGUGUGGCUCUACUCUUCCUCUCUGCUCUGCUCUGCCUACUCCGCAGCAGCA-GCAAGGAAAAUACAUAUGAGCACACAUACUUACAU -------.............-..(((.(((((((...(((.....)))))))))).)))((((.....(((((..(((((((((............)))).))))-)..))))).........)))).............. ( -38.14, z-score = -3.52, R) >consensus UCAGUCGUCAGUUUUUCUUCAGUGGCUUCGCGCGUCCGCAAUUUUCAGUGUGUGGUGCGUUGUUGCUGCUGCCUACU_CUUUUCUUUCUGCUCUCCACGGCAGCGGGAAAGGAAAAUACAUACACAUGCAUACAG______ ...................(((((((..(((((..(((((........)))).)..))).))..))))))).......((((((...((((........))))...))))))............................. (-19.33 = -21.22 + 1.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:12:36 2011