| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,417,245 – 6,417,344 |
| Length | 99 |
| Max. P | 0.999027 |
| Location | 6,417,245 – 6,417,344 |
|---|---|
| Length | 99 |
| Sequences | 12 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 73.65 |
| Shannon entropy | 0.55018 |
| G+C content | 0.36776 |
| Mean single sequence MFE | -28.43 |
| Consensus MFE | -12.22 |
| Energy contribution | -11.53 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.45 |
| Mean z-score | -3.38 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.60 |
| SVM RNA-class probability | 0.999027 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6417245 99 - 21146708 AUGCUCCG-CCCAACGGUAUCGGUUGGGCGAAGUGAAAUA---CAAGAAUG--AAGUAAAUUUAU-UAUUUUAAGUUCA-UUUUUG-UUUGACU-CCGAAAAUAUCCUA-- ..(((.((-((((((.......)))))))).))).....(---((((((((--((.((((.....-...))))..))))-))))))-)......-..............-- ( -27.80, z-score = -3.37, R) >droPer1.super_4 576951 88 - 7162766 AUGCUUCG-CUCAACGGUAUCGGUUGGGCGAAGUGACAUG---CAAAAAUG--AAAUAAAUUUUUGUAUUUUAAGUUGA-UUUUCG-UUCAACCAU--------------- ..((((((-((((((.......))))))))))))((.(((---(((((((.--......)))))))))).))..(((((-......-.)))))...--------------- ( -29.30, z-score = -4.68, R) >dp4.chr3 3591642 88 + 19779522 AUGCUUCG-CUCAACGGUAUCGGUUGGGCGAAGUGACAUG---CAAAAAUG--AAAUAAAUUUUUGUAUUUUAAGUUGA-UUUUCG-UUCAACCAU--------------- ..((((((-((((((.......))))))))))))((.(((---(((((((.--......)))))))))).))..(((((-......-.)))))...--------------- ( -29.30, z-score = -4.68, R) >droAna3.scaffold_13266 17892251 82 - 19884421 AUGCUCCG-CUCGACGGUAUCGGUUGGGCGGAGUGCCGCA---CAA-AAUG--AAGUAAAUUUUG-UAUUUUAAGUUCA-UUUUUGUUUGA-------------------- ..((((((-((((((.......))))))))))))...(((---.((-((((--((.((((.....-...))))..))))-)))))))....-------------------- ( -27.80, z-score = -3.36, R) >droEre2.scaffold_4845 3254487 100 + 22589142 AUGCUCCG-CCCAACGGUAUCGGUUGGGCGAAGUGAAAUG---CAAGAAUG--AAGUAAAUUUUU-UAUUUUAAGUUCA-UUUUUG-UUUGACUCCCAAAAAUAUCCUA-- ..(((.((-((((((.......)))))))).))).....(---((((((((--((.((((.....-...))))..))))-))))))-).....................-- ( -28.10, z-score = -3.34, R) >droYak2.chr2R 18415638 101 + 21139217 AUGCUCCG-CCCAACGGUAUCGGUUGGGCGAAGUGAAAUA---CAAGAAUG--AAGUAAAUUUUG-UAUUUUAAGUUAA-UUUUUG-UUCGAUU-CCCGAAAUAUCCUAAC ..(((.((-((((((.......)))))))).)))((((((---(((((.(.--.....).)))))-))))))..((((.-......-((((...-..))))......)))) ( -27.12, z-score = -2.93, R) >droSec1.super_1 4028700 99 - 14215200 AUGCUCCG-CCCAACGGUAUCGGUUGGGCGAAGUGAAAGA---CAAGAAUG--AAGUAAAUUUUU-UAUUUUAAGUUCA-UUUUUG-UUUGACU-CCGAAAAUAUCCUA-- ..(((.((-((((((.......)))))))).)))...(((---((((((((--((.((((.....-...))))..))))-))))))-)))....-..............-- ( -30.40, z-score = -3.91, R) >droSim1.chr2R 5046229 99 - 19596830 AUGCUCCG-CCCAACGGUAUCGGUUGGGCGAAGUGAAAGA---CAAGAAUG--AAGUAAAUUUUU-UAUUUUAAGUUCA-UUUUUG-UUUGACU-CCGAAAAUAUCCUA-- ..(((.((-((((((.......)))))))).)))...(((---((((((((--((.((((.....-...))))..))))-))))))-)))....-..............-- ( -30.40, z-score = -3.91, R) >droVir3.scaffold_12875 16402135 98 - 20611582 AUGCUUCG-CUCGACGGUAUCGGUUGGGCGAAGUG-CGAA---CAA-AAUG--AAAUUAAUUUUGAUAUUUUAAGUUCGUUUUUUG-UUUGUGCC---AAACAAAUCCAA- ..((((((-((((((.......))))))))))))(-((((---(((-((((--((.((((..........)))).)))))..))))-)))))...---............- ( -29.20, z-score = -2.92, R) >droGri2.scaffold_15245 5250730 101 - 18325388 AUGCUUCG-CCCGACGGUAUCGGUUGGGCGAAGUG-CGCA---CAA-AAUG--AAAUAAAUUUUGAAAUUUUAAGUUCAGUUUUUGUUUUGUACC-CAAAACUAAUCCAA- ..((((((-((((((.......)))))))))))).-....---...-.(..--(((((((..(((((........)))))..)))))))..)...-..............- ( -30.40, z-score = -3.34, R) >droMoj3.scaffold_6496 19506730 101 + 26866924 AUGCUUCG-CUUGACGGUAUCGGUUGAGCGAAGUG-CCAA---GAA-AAUG--AAGUAAAUUUUGAUAUUUUAAGUUCG-UUUUUGUUUCGAGCCCCAAAAAAAGUCCAA- ..((((((-((..((.......))..)))))))).-....---(((-((((--((.((((.........))))..))))-))))).........................- ( -23.10, z-score = -1.48, R) >droWil1.scaffold_180569 320875 109 - 1405142 AUGCUUUGACCCAACGGUAUCGGUUGGGCAAAGGAACUCGAAUAAAGAAUGCAAAAUCCAAUUUGUUCCUCGAUAUUAUGAGUUCAUUUUUCAUCCAAAAAUCACCUUU-- ...(((((.((((((.......)))))))))))(((((((((((..((..(((((......)))))...))..)))).)))))))........................-- ( -28.20, z-score = -2.70, R) >consensus AUGCUCCG_CCCAACGGUAUCGGUUGGGCGAAGUGACAUA___CAAGAAUG__AAGUAAAUUUUG_UAUUUUAAGUUCA_UUUUUG_UUUGACU_CC_AAAAUAUCCUA__ ..(((.((.((((((.......)))))))).)))............................................................................. (-12.22 = -11.53 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:12:31 2011