| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,410,359 – 6,410,465 |
| Length | 106 |
| Max. P | 0.707471 |
| Location | 6,410,359 – 6,410,465 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 88.01 |
| Shannon entropy | 0.21852 |
| G+C content | 0.57896 |
| Mean single sequence MFE | -41.95 |
| Consensus MFE | -31.84 |
| Energy contribution | -33.48 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.707471 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6410359 106 + 21146708 UUCUGGUGGUUUGCUGUGCUGCUG------GCUGCGGUCUGAUGCUCCGCCGGCUUCUUGCUGGCCGCACUGGCCGCUGCUAUAACUGCCGUGGCAUAAUUACAGUAAAGCG .......(.(((((((((....((------((.((((((.(.(((...((((((.....)))))).)))).)))))).))))....(((....)))....))))))))).). ( -44.20, z-score = -1.94, R) >droSim1.chr2R 5038354 103 + 19596830 UUCUGGUGGUUUGUUGUGCUG---------GCUGCGGUCUGAUGCUCCGCCGGCUUCUUGCUGGCCGCACUGGCCGCUGCUAUAACUGCCGUGGCAUAAUUACAGUAAAGCG ............(((.(((((---------((.((((((.(.(((...((((((.....)))))).)))).)))))).))......(((....)))......))))).))). ( -39.10, z-score = -1.05, R) >droSec1.super_1 4021770 103 + 14215200 UUCUGGUGGUUUGCUGUGCUG---------GCUGCGGUCUGAUGCUCCGCCGGCUUCUUGCUGGCCGCACUGGCCGCUGCUAUAACUGCCGUGGCAUAAUUACAGUAAAGCG .......(.(((((((((.((---------((.((((((.(.(((...((((((.....)))))).)))).)))))).))))....(((....)))....))))))))).). ( -44.20, z-score = -2.43, R) >droYak2.chr2R 18408551 103 - 21139217 UUCUGGUGGUUUGCUGUGGUG---------GCUGCGGUCUGAUGCUCCGCCGGCUUCUUGCUGGCCGCACUCGCCGCUGCUAUAACUGCCGUGGCAUAAUUACAGUAAAGCG .......(.((((((((((((---------((.(((((..(.(((...((((((.....)))))).))))..))))).)))))...(((....)))....))))))))).). ( -44.00, z-score = -2.56, R) >droEre2.scaffold_4845 3247217 112 - 22589142 UUCUGGUGGUUUGCUGUGCUGCUGGUGGUUGAUGCGGUCUGAUGCUCCGCCGGCUUCUUGCUGGCCGCACUGGCCGCUGCUAUAACUGCCGUGGCAUAAUUACAGUAAAGCG .......(.((((((((((..(.((..((((..((((((.(.(((...((((((.....)))))).)))).)))))).....))))..)))..))......)))))))).). ( -47.90, z-score = -2.67, R) >droAna3.scaffold_13266 17885048 88 + 19884421 -------------UUGUGCUG----------CUGCUG-CUGGUCCACUGGUGGCUUCUUGCUGGCCGCACUGGCCGCCGCUAUAACUGCCGUGGCAUAAUUACAGUAAAGCG -------------....(((.----------.(((((-..((.(((...((((((.......))))))..)))))(((((..........))))).......))))).))). ( -32.30, z-score = -0.45, R) >consensus UUCUGGUGGUUUGCUGUGCUG_________GCUGCGGUCUGAUGCUCCGCCGGCUUCUUGCUGGCCGCACUGGCCGCUGCUAUAACUGCCGUGGCAUAAUUACAGUAAAGCG .......(.(((((((((............((.((((((.(.(((...((((((.....)))))).)))).)))))).))......(((....)))....))))))))).). (-31.84 = -33.48 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:12:30 2011