Locus 3561

Sequence ID	dm3.chr2R
Location	6,403,047 – 6,403,165
Length	118
Max. P	0.606399

overview

Window 5

Location	6,403,047 – 6,403,165
Length	118
Sequences	13
Columns	120
Reading direction	reverse
Mean pairwise identity	93.32
Shannon entropy	0.16026
G+C content	0.43229
Mean single sequence MFE	-32.58
Consensus MFE	-27.82
Energy contribution	-27.84
Covariance contribution	0.02
Combinations/Pair	1.37
Mean z-score	-1.52
Structure conservation index	0.85
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.24
SVM RNA-class probability	0.606399
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 6403047 118 - 21146708
--AGAUAUGAAUGUGGUGGACAGAAAAAAUUUCGCUGUCUGAUGUGCGGCAAAGCAUUUUCACAAAGCUCCCACCUAAAGCGACACCUUGAGAGCGGUGUCUGUGUCAAAUAUUACUUAU
--.(((((......(((((...(((.....)))(((...(((.((((......))))..)))...)))..)))))......((((((.(....).)))))).)))))............. ( -33.20, z-score =  -1.87, R)
>droSim1.chr2R 5030779 118 - 19596830
--AGAUAUGAAUGUGGUGGACAGAAAAAAUUUCGCUGUCUGAUGUGCGGCAAAGCAUUUUCACAAAGCUCCCACCUAAAGCGACACCUUGAGAGCGGUGUCUGUGUCAAAUAUUACUUAU
--.(((((......(((((...(((.....)))(((...(((.((((......))))..)))...)))..)))))......((((((.(....).)))))).)))))............. ( -33.20, z-score =  -1.87, R)
>droSec1.super_1 4014577 118 - 14215200
--AGAUAUGAAUGUGGUGGACAGAAAAAAUUUCGCUGUCUGAUGUGCGGCAAAGCAUUUUCACAAAGCUCCCACCUAAAGCGACACCUUGAGAGCGGUGUCUGUGUCAAAUAUUACUUAU
--.(((((......(((((...(((.....)))(((...(((.((((......))))..)))...)))..)))))......((((((.(....).)))))).)))))............. ( -33.20, z-score =  -1.87, R)
>droYak2.chr2R 18401481 118 + 21139217
--AGAUAUGAAUGUGGAGGACAGAAAAAAUUUCGCUGUCUGAUGUGCGGCAAAGCAUUUUCACAAAGCUCCCACCUAAAGCGACACCUUGAAAGCGGUGUCUGUGUCAAAUAUUACUUAU
--.(((((...((.(((((((((...........)))))(((.((((......))))..))).....))))))........((((((.(....).)))))).)))))............. ( -30.60, z-score =  -1.45, R)
>droEre2.scaffold_4845 3239830 120 + 22589142
CCAGAUAUGAAUGUGGUGGACAGAAAAAAUUUCGCUGUCUGAUGUGCGGCAAAGCAUUUUCACAAAGCUCCCACCUAAAGCGACACCUUGAGAGCGGUGUCUGUGUCAAAUAUUACUUAU
...(((((......(((((...(((.....)))(((...(((.((((......))))..)))...)))..)))))......((((((.(....).)))))).)))))............. ( -33.20, z-score =  -1.70, R)
>droAna3.scaffold_13266 17878144 118 - 19884421
--AGAUAUGAAUGUGGUGGACAGAAAAAAUUUCGCUGUCUGAUGUGCGGCAAAGCAUUUUCACAAAGCUCCCACCUAAAGCGACACCUUGAGUCCGGUGUCUGUGUCAAAUAUUACUUAU
--.(((((......(((((...(((.....)))(((...(((.((((......))))..)))...)))..)))))......((((((........)))))).)))))............. ( -32.40, z-score =  -1.86, R)
>dp4.chr3 3576998 118 + 19779522
--AGAUAUGAAUGUGGUGGACAGAAAAAAUUUCGCUGUCUGAUGUGCGGCAAAGCAUUUUCACAAAGCUCCCACCUAAAGCGGCACCUUGAGUCCGGUGUCUGUGUCAAAUAUUACUUAU
--.(((((......(((((...(((.....)))(((...(((.((((......))))..)))...)))..)))))......((((((........)))))).)))))............. ( -31.80, z-score =  -1.27, R)
>droPer1.super_4 562451 118 - 7162766
--AGAUAUGAAUGUGGUGGACAGAAAAAAUUUCGCUGUCUGAUGUGCGGCAAAGCAUUUUCACAAAGCUCCCACCUAAAGCGGCACCUUGAGUCCGGUGUCUGUGUCAAAUAUUACUUAU
--.(((((......(((((...(((.....)))(((...(((.((((......))))..)))...)))..)))))......((((((........)))))).)))))............. ( -31.80, z-score =  -1.27, R)
>droWil1.scaffold_180569 304229 118 - 1405142
--AGAUAUGAAUGUGGUGGACAGAAAAAAUUUCGCUGUCUGAUGUGCGGCAAAGCAUUUUCCCAAAGCUCCCACCUAAAGCGACACCUUGAGUCUGGUGUUUGUGUCAAAUAUUACUUAU
--.(((((......(((((...(((.....)))(((....((.((((......))))..))....)))..)))))......((((((........)))))).)))))............. ( -28.60, z-score =  -0.90, R)
>droVir3.scaffold_12875 16384939 118 - 20611582
--AGAUAUGAAUGUGGUGGACAGAAAAAAUUUCGCUGUCUGAUGUGCGGCAAAGCAUUUUCACAAAGCUCCCACCUAAAGCGGCACCUUGAGUCCGGUGUCUGUGUCAAAUAUUACUUAU
--.(((((......(((((...(((.....)))(((...(((.((((......))))..)))...)))..)))))......((((((........)))))).)))))............. ( -31.80, z-score =  -1.27, R)
>droMoj3.scaffold_6496 19488689 118 + 26866924
--AGAUAUGAAUGUGGUGGACAGAAAAAAUUUCGCUGUCUGAUGUGCGGCAAAGCAUUUUCACAAAGCUCCCACCUAAAGAGGCACCUUGAGUCCGGUGUCUGUGUCAAAUAUUACUUAU
--.(((((......(((((...(((.....)))(((...(((.((((......))))..)))...)))..))))).....(((((((........))))))))))))............. ( -33.00, z-score =  -1.78, R)
>droGri2.scaffold_15245 5233705 118 - 18325388
--AGAUAUGAAUGUGGUGGACAGAAAAAAUUUCGCUGUCUGAUGUGCGGCAAAGCAUUUUCACAAAGCUCCCACCUAAAACGGCACCUUGAGUCCGGUGUCUGUGUCAAAUAUUACUUAU
--.(((((......(((((...(((.....)))(((...(((.((((......))))..)))...)))..)))))......((((((........)))))).)))))............. ( -31.80, z-score =  -1.60, R)
>anoGam1.chr2L 36432941 118 + 48795086
--AGGUACGAAUGUGGCGGCAUGAAGAAGUUUCGAUGCGUGAUGUGUGGGAAAGCCUUCUCGCAGGGAUCGCACUUGAAGCGUCACUUGGAGUCCGGGGUGUGCAUAAAGUACUACUUCU
--.((.((....(((((..(.....)..(((((((((((...(.((((((((....)))))))).)...)))).)))))))))))).....))))(((((((((.....)))).))))). ( -39.00, z-score =  -1.01, R)
>consensus
__AGAUAUGAAUGUGGUGGACAGAAAAAAUUUCGCUGUCUGAUGUGCGGCAAAGCAUUUUCACAAAGCUCCCACCUAAAGCGACACCUUGAGUCCGGUGUCUGUGUCAAAUAUUACUUAU
...(((((......(((((...((((...))))(((...(((.((((......))))..)))...)))..)))))......((((((........)))))).)))))............. (-27.82 = -27.84 +   0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:12:30 2011