| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,457,157 – 2,457,256 |
| Length | 99 |
| Max. P | 0.761213 |
| Location | 2,457,157 – 2,457,256 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 75.49 |
| Shannon entropy | 0.43990 |
| G+C content | 0.53962 |
| Mean single sequence MFE | -30.78 |
| Consensus MFE | -22.99 |
| Energy contribution | -23.13 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.761213 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2457157 99 + 23011544 ACUUUACCUAUAUGUGUAUAUAGACAGAUCCGAAAAGGUAGGCCGGUGUGGGCCAGGGUCUUUAGCACAGGCGCCAGUCGUAAAAAGGCGGCUGGACAA------ ...((((((..((.(((......))).))......))))))(((.((((((((....))))...)))).)))(((((((((......)))))))).)..------ ( -32.50, z-score = -1.36, R) >droSim1.chr2L 2417633 98 + 22036055 -ACUUACCUAUAUGUGUAUAUAGACAGAUCCGAAAAGGUAGGCCGGUGUGGGCCAGGGUCUUUAGCACAGGCGCCAGUCGUAAAAAGGCGGCUGGACAA------ -..((((((..((.(((......))).))......))))))(((.((((((((....))))...)))).)))(((((((((......)))))))).)..------ ( -32.40, z-score = -1.32, R) >droSec1.super_5 630683 98 + 5866729 -ACUUACCUAUAUGUGUAUAUAGACAGAUCCGAAAAGGUAGUCCGAUGUGGGCCAGGGUCUUUAGCACAGGCGCCAGUCGUAAAAAGGCGGCUGGACAA------ -...........(((((.((.((((.(..(((....((....))....)))..)...)))).)))))))...(((((((((......)))))))).)..------ ( -29.10, z-score = -0.92, R) >droAna3.scaffold_12913 197899 96 - 441482 -----AUGUACAUAUAUG-GUAUAUAGAUCCGAGAAGGUAGGCCGG-GUGGGCCGGGGUCUUUAGCACAGGCGCCAGUCGUAAAAAGGCGGCUGGCUGGACAA-- -----((((((.......-))))))...(((((((.....((((..-...))))....))))..((....))(((((((((......))))))))).)))...-- ( -33.30, z-score = -1.52, R) >dp4.chr4_group4 1723337 89 + 6586962 ----------------GAUCGGAUCGGAUCCUCAAAGGUAGGCCAGGGUGGGCCAGAGUCUUUAGCACAGGCGCCAGUCGUAAAAAGGCGGCUGGACAGCGGCAA ----------------((((......))))...(((((..((((......))))....))))).((....((.((((((((......))))))))...)).)).. ( -28.70, z-score = -0.44, R) >droPer1.super_10 726748 89 + 3432795 ----------------GAUCGGAUCGGAUCCUCAAAGGUAGGCCAGGGUGGGCCAGAGUCUUUAGCACAGGCGCCAGUCGUAAAAAGGCGGCUGGACAGCGGCAA ----------------((((......))))...(((((..((((......))))....))))).((....((.((((((((......))))))))...)).)).. ( -28.70, z-score = -0.44, R) >consensus _____ACCUAUAUGUGUAUAUAGACAGAUCCGAAAAGGUAGGCCGGUGUGGGCCAGGGUCUUUAGCACAGGCGCCAGUCGUAAAAAGGCGGCUGGACAA______ .........................((((((.........((((......)))).))))))...((....))(((((((((......)))))))).)........ (-22.99 = -23.13 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:11:24 2011